Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC0.17□□□□□ -2.38
VPS13AQ96RL7 AF279873.1-201ENST00000523393 313 ntBASIC0.17□□□□□ -2.38
VPS13AQ96RL7 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC0.17□□□□□ -2.38
VPS13AQ96RL7 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC0.17□□□□□ -2.38
VPS13AQ96RL7 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC0.17□□□□□ -2.38
VPS13AQ96RL7 AC073410.2-201ENST00000603240 332 ntBASIC0.17□□□□□ -2.38
VPS13AQ96RL7 Y_RNA.413-201ENST00000384007 102 ntBASIC0.16□□□□□ -2.38
VPS13AQ96RL7 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.16□□□□□ -2.38
VPS13AQ96RL7 HMGN2P30-201ENST00000423237 256 ntBASIC0.16□□□□□ -2.38
VPS13AQ96RL7 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC0.16□□□□□ -2.38
VPS13AQ96RL7 Y_RNA.754-201ENST00000476024 102 ntBASIC0.16□□□□□ -2.38
VPS13AQ96RL7 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.16□□□□□ -2.38
VPS13AQ96RL7 AL365204.3-201ENST00000612448 685 ntBASIC0.16□□□□□ -2.38
VPS13AQ96RL7 Y_RNA.790-201ENST00000614282 102 ntBASIC0.16□□□□□ -2.38
VPS13AQ96RL7 Y_RNA.782-201ENST00000614695 102 ntBASIC0.16□□□□□ -2.38
VPS13AQ96RL7 SNORD114-31-201ENST00000363219 75 ntBASIC0.16□□□□□ -2.38
VPS13AQ96RL7 RNU6-799P-201ENST00000363567 107 ntBASIC0.16□□□□□ -2.38
VPS13AQ96RL7 VPS26BP1-201ENST00000417155 755 ntBASIC0.16□□□□□ -2.38
VPS13AQ96RL7 AC112206.3-201ENST00000514578 389 ntBASIC0.16□□□□□ -2.38
VPS13AQ96RL7 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.16□□□□□ -2.38
VPS13AQ96RL7 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC0.16□□□□□ -2.38
VPS13AQ96RL7 AC026371.1-201ENST00000551867 419 ntBASIC0.16□□□□□ -2.38
VPS13AQ96RL7 NBEAP1-201ENST00000554452 979 ntBASIC0.16□□□□□ -2.38
VPS13AQ96RL7 AC009518.2-201ENST00000418056 731 ntBASIC0.16□□□□□ -2.38
VPS13AQ96RL7 SYPL1P1-201ENST00000473622 768 ntBASIC0.16□□□□□ -2.38
VPS13AQ96RL7 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC0.16□□□□□ -2.38
VPS13AQ96RL7 AC136628.3-201ENST00000521868 290 ntBASIC0.16□□□□□ -2.38
VPS13AQ96RL7 AL109918.3-201ENST00000603072 338 ntBASIC0.16□□□□□ -2.38
VPS13AQ96RL7 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC0.16□□□□□ -2.38
VPS13AQ96RL7 RNY3P5-201ENST00000384127 102 ntBASIC0.15□□□□□ -2.39
VPS13AQ96RL7 AL353689.1-201ENST00000438895 199 ntBASIC0.15□□□□□ -2.39
VPS13AQ96RL7 Y_RNA.659-201ENST00000515994 113 ntBASIC0.15□□□□□ -2.39
VPS13AQ96RL7 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC0.15□□□□□ -2.39
VPS13AQ96RL7 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC0.15□□□□□ -2.39
VPS13AQ96RL7 HSPE1P19-201ENST00000603327 295 ntBASIC0.15□□□□□ -2.39
VPS13AQ96RL7 uc_338.6-201ENST00000613544 171 ntBASIC0.15□□□□□ -2.39
VPS13AQ96RL7 Y_RNA.804-201ENST00000615262 101 ntBASIC0.15□□□□□ -2.39
VPS13AQ96RL7 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC0.15□□□□□ -2.39
VPS13AQ96RL7 SNORD118-201ENST00000363593 134 ntBASIC0.15□□□□□ -2.39
VPS13AQ96RL7 RNU4-9P-201ENST00000364951 139 ntBASIC0.15□□□□□ -2.39
VPS13AQ96RL7 MIR618-201ENST00000385287 98 ntBASIC0.15□□□□□ -2.39
VPS13AQ96RL7 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.15□□□□□ -2.39
VPS13AQ96RL7 RPL21P104-201ENST00000464143 478 ntBASIC0.15□□□□□ -2.39
VPS13AQ96RL7 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC0.15□□□□□ -2.39
VPS13AQ96RL7 Y_RNA.100-201ENST00000363141 102 ntBASIC0.14□□□□□ -2.39
VPS13AQ96RL7 NF1P3-201ENST00000457709 450 ntBASIC0.14□□□□□ -2.39
VPS13AQ96RL7 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC0.14□□□□□ -2.39
VPS13AQ96RL7 XKRY2-202ENST00000623874 1581 ntBASIC0.14□□□□□ -2.39
VPS13AQ96RL7 XKRY-202ENST00000624960 1581 ntBASIC0.14□□□□□ -2.39
VPS13AQ96RL7 Y_RNA.288-201ENST00000364854 92 ntBASIC0.14□□□□□ -2.39
VPS13AQ96RL7 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC0.14□□□□□ -2.39
VPS13AQ96RL7 HMGN2P22-201ENST00000427588 175 ntBASIC0.14□□□□□ -2.39
VPS13AQ96RL7 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC0.14□□□□□ -2.39
VPS13AQ96RL7 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.14□□□□□ -2.39
VPS13AQ96RL7 RNU6-1004P-201ENST00000516584 111 ntBASIC0.14□□□□□ -2.39
VPS13AQ96RL7 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC0.14□□□□□ -2.39
VPS13AQ96RL7 MIR4667-201ENST00000578933 66 ntBASIC0.14□□□□□ -2.39
VPS13AQ96RL7 MIR4305-201ENST00000583252 102 ntBASIC0.14□□□□□ -2.39
VPS13AQ96RL7 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC0.14□□□□□ -2.39
VPS13AQ96RL7 AC021171.1-201ENST00000603137 706 ntBASIC0.14□□□□□ -2.39
VPS13AQ96RL7 uc_338.17-201ENST00000619633 179 ntBASIC0.14□□□□□ -2.39
VPS13AQ96RL7 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.14□□□□□ -2.39
VPS13AQ96RL7 RNU6-452P-201ENST00000384406 107 ntBASIC0.14□□□□□ -2.39
VPS13AQ96RL7 RPS26P55-201ENST00000471178 356 ntBASIC0.14□□□□□ -2.39
VPS13AQ96RL7 AC115085.1-201ENST00000588924 229 ntBASIC0.14□□□□□ -2.39
VPS13AQ96RL7 SNORD3E-201ENST00000362899 217 ntBASIC0.13□□□□□ -2.39
VPS13AQ96RL7 AC009302.1-201ENST00000417147 390 ntBASIC0.13□□□□□ -2.39
VPS13AQ96RL7 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC0.13□□□□□ -2.39
VPS13AQ96RL7 RPL36AP53-201ENST00000432891 316 ntBASIC0.13□□□□□ -2.39
VPS13AQ96RL7 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC0.13□□□□□ -2.39
VPS13AQ96RL7 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC0.13□□□□□ -2.39
VPS13AQ96RL7 AL158211.1-201ENST00000566763 763 ntBASIC0.13□□□□□ -2.39
VPS13AQ96RL7 U8.7-201ENST00000364940 136 ntBASIC0.13□□□□□ -2.39
VPS13AQ96RL7 CD24P4-201ENST00000382840 243 ntBASIC0.13□□□□□ -2.39
VPS13AQ96RL7 MIR4768-201ENST00000585270 74 ntBASIC0.13□□□□□ -2.39
VPS13AQ96RL7 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.13□□□□□ -2.39
VPS13AQ96RL7 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC0.13□□□□□ -2.39
VPS13AQ96RL7 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.13□□□□□ -2.39
VPS13AQ96RL7 CABYRP1-201ENST00000465493 1045 ntBASIC0.12□□□□□ -2.39
VPS13AQ96RL7 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC0.12□□□□□ -2.39
VPS13AQ96RL7 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.12□□□□□ -2.39
VPS13AQ96RL7 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC0.12□□□□□ -2.39
VPS13AQ96RL7 U4.2-201ENST00000618561 85 ntBASIC0.12□□□□□ -2.39
VPS13AQ96RL7 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC0.12□□□□□ -2.39
VPS13AQ96RL7 MIR147B-201ENST00000390185 80 ntBASIC0.12□□□□□ -2.39
VPS13AQ96RL7 RPL37P10-201ENST00000412884 288 ntBASIC0.12□□□□□ -2.39
VPS13AQ96RL7 RPL21P111-201ENST00000418453 477 ntBASIC0.12□□□□□ -2.39
VPS13AQ96RL7 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC0.12□□□□□ -2.39
VPS13AQ96RL7 OSTCP8-201ENST00000445117 448 ntBASIC0.12□□□□□ -2.39
VPS13AQ96RL7 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC0.12□□□□□ -2.39
VPS13AQ96RL7 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC0.12□□□□□ -2.39
VPS13AQ96RL7 FAM157B-203ENST00000639350 358 ntBASIC0.12□□□□□ -2.39
VPS13AQ96RL7 GDI2P1-201ENST00000429312 1336 ntBASIC0.12□□□□□ -2.39
VPS13AQ96RL7 AC008834.1-201ENST00000511612 175 ntBASIC0.12□□□□□ -2.39
VPS13AQ96RL7 EIF4EP5-201ENST00000528228 640 ntBASIC0.12□□□□□ -2.39
VPS13AQ96RL7 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC0.12□□□□□ -2.39
VPS13AQ96RL7 AL133507.1-201ENST00000605269 557 ntBASIC0.12□□□□□ -2.39
VPS13AQ96RL7 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC0.11□□□□□ -2.39
VPS13AQ96RL7 MIR601-201ENST00000385256 79 ntBASIC0.11□□□□□ -2.39
VPS13AQ96RL7 XIST-201ENST00000416330 750 ntTSL 2 BASIC0.11□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms