Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC174048.1-201ENST00000603389 144 ntBASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 AC006157.1-201ENST00000611750 366 ntBASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 FAM157A-202ENST00000615155 405 ntBASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 AC007998.5-201ENST00000622938 237 ntBASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.71□□□□□ -1.66
USHBP1Q8N6Y0 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 MAPK10-253ENST00000641010 4072 ntBASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 Y_RNA.527-201ENST00000384573 102 ntBASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 SNORA16.2-201ENST00000390991 127 ntBASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 SNORA75.6-201ENST00000391318 127 ntBASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 RNU6-1050P-201ENST00000410388 107 ntBASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 RN7SKP58-201ENST00000411010 305 ntBASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 RNA5SP111-201ENST00000411386 101 ntBASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 AC009310.1-201ENST00000414414 451 ntBASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 RPLP0P7-201ENST00000416050 667 ntBASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 MTCO3P45-201ENST00000443036 613 ntBASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 AC010631.1-201ENST00000474150 156 ntBASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 RPS29P2-201ENST00000479278 136 ntBASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 RPL7P23-201ENST00000493874 747 ntBASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 AP001086.1-201ENST00000494882 321 ntBASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 RNU1-54P-201ENST00000517181 120 ntBASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 AC006254.3-201ENST00000603353 884 ntBASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 AL158032.1-201ENST00000605401 106 ntBASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 BRDTP1-201ENST00000605735 677 ntBASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 OTUD4P1-201ENST00000237841 3067 ntBASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
USHBP1Q8N6Y0 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 RNU6-490P-201ENST00000362985 107 ntBASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 Y_RNA.188-201ENST00000363952 111 ntBASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 RNU6-701P-201ENST00000384059 107 ntBASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 RNY1P14-201ENST00000384426 108 ntBASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 RNU6-821P-201ENST00000390995 107 ntBASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 RPL23AP33-201ENST00000442301 452 ntBASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 GAPDHP27-201ENST00000447427 1020 ntBASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 AL162389.1-201ENST00000449233 177 ntBASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 AC128713.1-201ENST00000471495 306 ntBASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 AC026782.1-201ENST00000512952 449 ntBASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 GMPSP1-201ENST00000514075 579 ntBASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 RNU6-470P-201ENST00000515954 104 ntBASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 AL161713.1-201ENST00000555538 145 ntBASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 AC018462.2-201ENST00000605375 395 ntBASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 AC011373.1-201ENST00000607270 237 ntBASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 AC009229.3-201ENST00000608056 282 ntBASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 AL442067.1-201ENST00000613261 223 ntBASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 MIR4496-201ENST00000635896 61 ntBASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 AL592437.2-201ENST00000421655 2434 ntBASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
USHBP1Q8N6Y0 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 RN7SKP53-201ENST00000411337 315 ntBASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 HNRNPDLP1-201ENST00000412834 550 ntBASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 AC008065.1-201ENST00000428525 348 ntBASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 HIGD1AP11-201ENST00000438361 280 ntBASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 AC104472.2-201ENST00000469035 601 ntBASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 RPL32P34-201ENST00000486380 400 ntBASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 AC093663.1-201ENST00000497190 394 ntBASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 MRPS35P2-201ENST00000508242 191 ntBASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 RNU2-69P-201ENST00000516061 100 ntBASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 Y_RNA.670-201ENST00000516255 105 ntBASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 RNU6-1332P-201ENST00000516666 104 ntBASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 IGKV2-26-201ENST00000518305 343 ntBASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 AP000889.1-201ENST00000530968 660 ntBASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms