Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.29□□□□□ -2.2
USP54Q70EL1 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC1.29□□□□□ -2.2
USP54Q70EL1 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC1.29□□□□□ -2.2
USP54Q70EL1 MTCO1P18-201ENST00000455518 1419 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 SNORD97-201ENST00000459187 142 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 BLNK-209ENST00000495266 440 ntTSL 5 BASIC1.29□□□□□ -2.2
USP54Q70EL1 AC026801.1-201ENST00000497178 464 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 AC023141.11-201ENST00000508864 202 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.29□□□□□ -2.2
USP54Q70EL1 AC022483.1-201ENST00000514020 567 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
USP54Q70EL1 AC087465.1-201ENST00000560574 245 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC1.29□□□□□ -2.2
USP54Q70EL1 FAM71BP1-201ENST00000604431 523 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 AC135507.1-201ENST00000607214 561 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 AC007349.4-201ENST00000608114 532 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 AC073308.1-201ENST00000623696 305 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 ZNF702P-202ENST00000434269 1966 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
USP54Q70EL1 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.29□□□□□ -2.2
USP54Q70EL1 RNU6-217P-201ENST00000384164 104 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 AL356432.1-201ENST00000405809 419 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC1.29□□□□□ -2.2
USP54Q70EL1 AC008850.1-201ENST00000427546 362 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 AL591212.2-201ENST00000433923 257 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC1.29□□□□□ -2.2
USP54Q70EL1 RNU6-1132P-201ENST00000459214 107 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 AC084024.2-201ENST00000503480 791 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 AC138853.1-201ENST00000503549 823 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 RNU7-193P-201ENST00000516723 65 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC1.29□□□□□ -2.2
USP54Q70EL1 AL109918.3-201ENST00000603072 338 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 FTX_3.1-201ENST00000610451 147 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 AC008133.2-201ENST00000624540 351 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 MIR7157-201ENST00000635801 60 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 AC023141.4-201ENST00000412031 328 ntBASIC1.28□□□□□ -2.2
USP54Q70EL1 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.28□□□□□ -2.2
USP54Q70EL1 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC1.28□□□□□ -2.2
USP54Q70EL1 AL500527.1-201ENST00000448532 255 ntBASIC1.28□□□□□ -2.2
USP54Q70EL1 HSPE1P24-201ENST00000450782 238 ntBASIC1.28□□□□□ -2.2
USP54Q70EL1 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.28□□□□□ -2.2
USP54Q70EL1 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.28□□□□□ -2.2
USP54Q70EL1 BPTFP1-201ENST00000579209 492 ntBASIC1.28□□□□□ -2.2
USP54Q70EL1 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC1.28□□□□□ -2.2
USP54Q70EL1 SNORD14A-201ENST00000606526 91 ntBASIC1.28□□□□□ -2.2
USP54Q70EL1 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC1.28□□□□□ -2.2
USP54Q70EL1 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC1.28□□□□□ -2.21
USP54Q70EL1 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
USP54Q70EL1 AL161449.1-201ENST00000414531 1199 ntBASIC1.27□□□□□ -2.21
USP54Q70EL1 EDDM3CP-201ENST00000415977 425 ntBASIC1.27□□□□□ -2.21
USP54Q70EL1 GTF2IP20-201ENST00000431663 360 ntBASIC1.27□□□□□ -2.21
USP54Q70EL1 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC1.27□□□□□ -2.21
USP54Q70EL1 RPS29P28-201ENST00000446439 141 ntBASIC1.27□□□□□ -2.21
USP54Q70EL1 SSR3-208ENST00000496050 579 ntTSL 4 BASIC1.27□□□□□ -2.21
USP54Q70EL1 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC1.27□□□□□ -2.21
USP54Q70EL1 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC1.27□□□□□ -2.21
USP54Q70EL1 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
USP54Q70EL1 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC1.27□□□□□ -2.21
USP54Q70EL1 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC1.27□□□□□ -2.21
USP54Q70EL1 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
USP54Q70EL1 AP000403.1-201ENST00000603349 851 ntBASIC1.27□□□□□ -2.21
USP54Q70EL1 MIR6857-201ENST00000613267 93 ntBASIC1.27□□□□□ -2.21
USP54Q70EL1 AC009032.1-201ENST00000617574 431 ntBASIC1.27□□□□□ -2.21
USP54Q70EL1 AC109809.1-201ENST00000619665 545 ntBASIC1.27□□□□□ -2.21
USP54Q70EL1 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
USP54Q70EL1 RNU6-1105P-201ENST00000384774 107 ntBASIC1.26□□□□□ -2.21
USP54Q70EL1 RNU6-750P-201ENST00000390946 107 ntBASIC1.26□□□□□ -2.21
USP54Q70EL1 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC1.26□□□□□ -2.21
USP54Q70EL1 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.26□□□□□ -2.21
USP54Q70EL1 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.26□□□□□ -2.21
USP54Q70EL1 TRBV26OR9-2-201ENST00000432077 293 ntBASIC1.26□□□□□ -2.21
USP54Q70EL1 AL596276.1-201ENST00000434465 418 ntBASIC1.26□□□□□ -2.21
USP54Q70EL1 AC093155.1-201ENST00000440164 826 ntBASIC1.26□□□□□ -2.21
USP54Q70EL1 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.26□□□□□ -2.21
USP54Q70EL1 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC1.26□□□□□ -2.21
USP54Q70EL1 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC1.26□□□□□ -2.21
USP54Q70EL1 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.26□□□□□ -2.21
USP54Q70EL1 AL391261.3-201ENST00000557194 520 ntBASIC1.26□□□□□ -2.21
USP54Q70EL1 AL020997.3-201ENST00000602843 359 ntBASIC1.26□□□□□ -2.21
USP54Q70EL1 AC068276.1-201ENST00000605793 379 ntBASIC1.26□□□□□ -2.21
USP54Q70EL1 AC243773.3-201ENST00000613270 256 ntBASIC1.26□□□□□ -2.21
USP54Q70EL1 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
USP54Q70EL1 SNORA16B-201ENST00000364674 135 ntBASIC1.26□□□□□ -2.21
USP54Q70EL1 RNA5SP240-201ENST00000365355 128 ntBASIC1.26□□□□□ -2.21
USP54Q70EL1 MIR625-201ENST00000385047 85 ntBASIC1.26□□□□□ -2.21
USP54Q70EL1 AL353689.1-201ENST00000438895 199 ntBASIC1.26□□□□□ -2.21
USP54Q70EL1 RPL23AP6-201ENST00000446637 472 ntBASIC1.26□□□□□ -2.21
USP54Q70EL1 AF213884.2-201ENST00000510417 903 ntBASIC1.26□□□□□ -2.21
USP54Q70EL1 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC1.26□□□□□ -2.21
USP54Q70EL1 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC1.26□□□□□ -2.21
USP54Q70EL1 AC124947.2-202ENST00000552735 133 ntBASIC1.26□□□□□ -2.21
USP54Q70EL1 MIR3126-201ENST00000577443 74 ntBASIC1.26□□□□□ -2.21
USP54Q70EL1 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC1.26□□□□□ -2.21
USP54Q70EL1 AL355297.2-201ENST00000604792 129 ntBASIC1.26□□□□□ -2.21
USP54Q70EL1 AC090132.2-201ENST00000615881 347 ntBASIC1.26□□□□□ -2.21
USP54Q70EL1 AP002791.1-201ENST00000623291 381 ntBASIC1.26□□□□□ -2.21
USP54Q70EL1 ANKRD26P2-201ENST00000445530 1710 ntBASIC1.25□□□□□ -2.21
USP54Q70EL1 AC008555.8-201ENST00000623602 2168 ntBASIC1.25□□□□□ -2.21
USP54Q70EL1 SNORA27.3-201ENST00000364937 134 ntBASIC1.25□□□□□ -2.21
USP54Q70EL1 RNU1-78P-201ENST00000391248 165 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms