Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RNU1-143P-201ENST00000516296 146 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 RNA5SP503-201ENST00000517047 117 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.9□□□□□ -1.79
VPS53Q5VIR6 AC022690.1-201ENST00000526681 550 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 OR5AL2P-201ENST00000532185 920 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 AC023050.3-201ENST00000541142 333 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 MIR2682-201ENST00000580305 110 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.9□□□□□ -1.79
VPS53Q5VIR6 AC007179.3-201ENST00000604976 235 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 U1.23-201ENST00000610293 146 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 RNU1-68P-201ENST00000615382 146 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 AC002076.2-201ENST00000617362 122 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 U1.39-201ENST00000621562 146 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.9□□□□□ -1.79
VPS53Q5VIR6 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
VPS53Q5VIR6 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
VPS53Q5VIR6 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.89□□□□□ -1.79
VPS53Q5VIR6 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
VPS53Q5VIR6 RNU5A-1-201ENST00000362698 116 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 RNA5SP383-201ENST00000362934 120 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 SNORD81.2-201ENST00000365153 76 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 SNORA70.4-201ENST00000365509 134 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 MIR493-201ENST00000385254 89 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 MIR591-201ENST00000385290 95 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 SNORD37.1-201ENST00000390968 65 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.89□□□□□ -1.79
VPS53Q5VIR6 FAT1P1-201ENST00000406588 507 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 RN7SKP32-201ENST00000410167 303 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 RNU6-387P-201ENST00000411331 105 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 EEF1A1P40-201ENST00000412883 573 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 PPP1R11P2-201ENST00000423543 382 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC3.89□□□□□ -1.79
VPS53Q5VIR6 RAC1P6-201ENST00000423911 575 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 ERLEC1P1-201ENST00000433806 578 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 TRAPPC2P3-201ENST00000443200 321 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 RPL7P12-201ENST00000446719 750 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.89□□□□□ -1.79
VPS53Q5VIR6 AC012181.1-201ENST00000479895 423 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.89□□□□□ -1.79
VPS53Q5VIR6 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
VPS53Q5VIR6 AC243972.3-201ENST00000539655 198 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
VPS53Q5VIR6 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
VPS53Q5VIR6 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.89□□□□□ -1.79
VPS53Q5VIR6 BNIP3P22-201ENST00000593399 556 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 AL353621.2-201ENST00000605340 133 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 AL121757.2-201ENST00000611223 313 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 AC010133.1-201ENST00000615809 842 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 AC068831.7-201ENST00000616954 363 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 AC025034.2-201ENST00000623264 286 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
VPS53Q5VIR6 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.89□□□□□ -1.79
VPS53Q5VIR6 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.89□□□□□ -1.79
VPS53Q5VIR6 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
VPS53Q5VIR6 AC008568.2-201ENST00000623862 2313 ntBASIC3.89□□□□□ -1.79
VPS53Q5VIR6 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS53Q5VIR6 AC103710.2-202ENST00000641454 2853 ntBASIC3.88□□□□□ -1.79
VPS53Q5VIR6 RNU6-188P-201ENST00000364207 107 ntBASIC3.88□□□□□ -1.79
VPS53Q5VIR6 Y_RNA.356-201ENST00000365475 113 ntBASIC3.88□□□□□ -1.79
VPS53Q5VIR6 RNU6-61P-201ENST00000365528 109 ntBASIC3.88□□□□□ -1.79
VPS53Q5VIR6 RNU4-20P-201ENST00000365601 151 ntBASIC3.88□□□□□ -1.79
VPS53Q5VIR6 SNORA24.1-201ENST00000384401 135 ntBASIC3.88□□□□□ -1.79
VPS53Q5VIR6 Y_RNA.535-201ENST00000384612 99 ntBASIC3.88□□□□□ -1.79
VPS53Q5VIR6 RNU6-510P-201ENST00000391239 108 ntBASIC3.88□□□□□ -1.79
VPS53Q5VIR6 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.88□□□□□ -1.79
VPS53Q5VIR6 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS53Q5VIR6 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.88□□□□□ -1.79
VPS53Q5VIR6 GAPDHP27-201ENST00000447427 1020 ntBASIC3.88□□□□□ -1.79
VPS53Q5VIR6 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.88□□□□□ -1.79
VPS53Q5VIR6 RN7SL601P-201ENST00000471221 293 ntBASIC3.88□□□□□ -1.79
VPS53Q5VIR6 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
VPS53Q5VIR6 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC3.88□□□□□ -1.79
VPS53Q5VIR6 PSMA2P1-201ENST00000526365 646 ntBASIC3.88□□□□□ -1.79
VPS53Q5VIR6 HIGD1AP1-201ENST00000550979 275 ntBASIC3.88□□□□□ -1.79
VPS53Q5VIR6 AC078814.3-201ENST00000553036 491 ntBASIC3.88□□□□□ -1.79
VPS53Q5VIR6 RPS3AP23-202ENST00000574601 686 ntBASIC3.88□□□□□ -1.79
VPS53Q5VIR6 MIR4424-201ENST00000585257 86 ntBASIC3.88□□□□□ -1.79
VPS53Q5VIR6 RNU6-89P-201ENST00000606519 100 ntBASIC3.88□□□□□ -1.79
VPS53Q5VIR6 AC009570.1-201ENST00000609599 745 ntBASIC3.88□□□□□ -1.79
VPS53Q5VIR6 AC011155.2-201ENST00000623202 216 ntBASIC3.88□□□□□ -1.79
VPS53Q5VIR6 AC090617.10-201ENST00000624308 134 ntBASIC3.88□□□□□ -1.79
VPS53Q5VIR6 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS53Q5VIR6 U6.114-201ENST00000636407 96 ntBASIC3.88□□□□□ -1.79
VPS53Q5VIR6 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS53Q5VIR6 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS53Q5VIR6 SDAD1P2-201ENST00000441308 2028 ntBASIC3.87□□□□□ -1.79
VPS53Q5VIR6 RNU4-73P-201ENST00000363164 141 ntBASIC3.87□□□□□ -1.79
VPS53Q5VIR6 SNORA23-201ENST00000365128 182 ntBASIC3.87□□□□□ -1.79
VPS53Q5VIR6 SNORD115-7-201ENST00000365306 82 ntBASIC3.87□□□□□ -1.79
VPS53Q5VIR6 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS53Q5VIR6 Y_RNA.529-201ENST00000384586 119 ntBASIC3.87□□□□□ -1.79
VPS53Q5VIR6 AC110754.1-201ENST00000399740 601 ntBASIC3.87□□□□□ -1.79
VPS53Q5VIR6 AL356432.1-201ENST00000405809 419 ntBASIC3.87□□□□□ -1.79
VPS53Q5VIR6 AL606923.1-201ENST00000406616 190 ntBASIC3.87□□□□□ -1.79
VPS53Q5VIR6 OR6C66P-201ENST00000414917 930 ntBASIC3.87□□□□□ -1.79
VPS53Q5VIR6 TMEM167AP1-201ENST00000423409 219 ntBASIC3.87□□□□□ -1.79
VPS53Q5VIR6 RPL35AP12-201ENST00000425362 338 ntBASIC3.87□□□□□ -1.79
VPS53Q5VIR6 AL356867.1-201ENST00000429623 299 ntBASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms