Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 HSPE1P3-201ENST00000559254 309 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 AC087465.1-201ENST00000560574 245 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 MIR4789-201ENST00000577469 82 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 MIR5000-201ENST00000577717 103 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 AC012467.1-201ENST00000607740 256 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 AL161423.1-201ENST00000613700 262 ntBASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC1.54□□□□□ -2.16
CCDC88AQ3V6T2 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC1.53□□□□□ -2.16
CCDC88AQ3V6T2 SNORA18.2-201ENST00000383865 132 ntBASIC1.53□□□□□ -2.16
CCDC88AQ3V6T2 MIR217-201ENST00000384817 110 ntBASIC1.53□□□□□ -2.16
CCDC88AQ3V6T2 RNU2-32P-201ENST00000411193 191 ntBASIC1.53□□□□□ -2.16
CCDC88AQ3V6T2 AL158050.1-201ENST00000416077 457 ntBASIC1.53□□□□□ -2.16
CCDC88AQ3V6T2 SEPT2P1-201ENST00000419651 180 ntBASIC1.53□□□□□ -2.16
CCDC88AQ3V6T2 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC1.53□□□□□ -2.16
CCDC88AQ3V6T2 NDUFA5P7-201ENST00000452914 242 ntBASIC1.53□□□□□ -2.16
CCDC88AQ3V6T2 TPRKBP1-201ENST00000456243 481 ntBASIC1.53□□□□□ -2.16
CCDC88AQ3V6T2 PMCHL2-203ENST00000457791 237 ntBASIC1.53□□□□□ -2.16
CCDC88AQ3V6T2 AC138853.1-201ENST00000503549 823 ntBASIC1.53□□□□□ -2.16
CCDC88AQ3V6T2 ARL2BPP4-201ENST00000506854 471 ntBASIC1.53□□□□□ -2.16
CCDC88AQ3V6T2 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC1.53□□□□□ -2.16
CCDC88AQ3V6T2 MTATP6P25-201ENST00000574491 261 ntBASIC1.53□□□□□ -2.16
CCDC88AQ3V6T2 UBE2L4-201ENST00000587688 464 ntBASIC1.53□□□□□ -2.16
CCDC88AQ3V6T2 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC1.53□□□□□ -2.16
CCDC88AQ3V6T2 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.53□□□□□ -2.16
CCDC88AQ3V6T2 AC005832.2-201ENST00000538921 1430 ntBASIC1.53□□□□□ -2.16
CCDC88AQ3V6T2 AL133264.1-201ENST00000407157 562 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 VN1R108P-201ENST00000431580 830 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 MTND1P9-201ENST00000453775 944 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 RFC5P1-201ENST00000454419 874 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 HMGB3P17-201ENST00000504195 649 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 NDUFB4P2-201ENST00000509515 391 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 RNU6-751P-201ENST00000516382 101 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 AP001542.1-201ENST00000591314 200 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 AC005332.6-201ENST00000613178 446 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 AC002550.2-201ENST00000621246 394 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 AC040168.1-201ENST00000623594 991 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 AC090772.4-201ENST00000623599 362 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 AP003400.5-201ENST00000624827 617 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 MIR520E-201ENST00000384867 87 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 CISD1P1-201ENST00000393907 327 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 AC007435.1-201ENST00000421086 415 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 AC007742.1-201ENST00000425789 329 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 ELOCP26-201ENST00000436067 329 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 TRGVB-201ENST00000453257 471 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 RNU2-19P-201ENST00000517288 84 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 MIR4529-201ENST00000578110 78 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 AC026741.1-201ENST00000605892 482 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 AC104820.1-201ENST00000624183 307 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 MIR7515-201ENST00000637837 67 ntBASIC1.52□□□□□ -2.17
CCDC88AQ3V6T2 AL139098.1-201ENST00000407291 389 ntBASIC1.51□□□□□ -2.17
CCDC88AQ3V6T2 EDDM3CP-201ENST00000415977 425 ntBASIC1.51□□□□□ -2.17
CCDC88AQ3V6T2 TAF13P2-201ENST00000416876 286 ntBASIC1.51□□□□□ -2.17
CCDC88AQ3V6T2 CCDC58P2-201ENST00000417131 366 ntBASIC1.51□□□□□ -2.17
CCDC88AQ3V6T2 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC1.51□□□□□ -2.17
CCDC88AQ3V6T2 MTND5P25-201ENST00000430499 799 ntBASIC1.51□□□□□ -2.17
CCDC88AQ3V6T2 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.51□□□□□ -2.17
CCDC88AQ3V6T2 AL500527.1-201ENST00000448532 255 ntBASIC1.51□□□□□ -2.17
CCDC88AQ3V6T2 RPL31P41-201ENST00000477967 372 ntBASIC1.51□□□□□ -2.17
CCDC88AQ3V6T2 AC147055.4-201ENST00000504399 745 ntBASIC1.51□□□□□ -2.17
CCDC88AQ3V6T2 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.51□□□□□ -2.17
CCDC88AQ3V6T2 AC121161.1-201ENST00000510606 652 ntBASIC1.51□□□□□ -2.17
CCDC88AQ3V6T2 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.51□□□□□ -2.17
CCDC88AQ3V6T2 AC090502.2-201ENST00000549267 280 ntBASIC1.51□□□□□ -2.17
CCDC88AQ3V6T2 LARP7P2-201ENST00000575306 125 ntBASIC1.51□□□□□ -2.17
CCDC88AQ3V6T2 MIR4637-201ENST00000582405 84 ntBASIC1.51□□□□□ -2.17
CCDC88AQ3V6T2 AL022067.1-201ENST00000602426 454 ntBASIC1.51□□□□□ -2.17
CCDC88AQ3V6T2 AC016727.2-201ENST00000603988 621 ntBASIC1.51□□□□□ -2.17
CCDC88AQ3V6T2 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 RNU4-91P-201ENST00000364778 135 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 MIR135A2-201ENST00000384854 100 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 MIR514A1-201ENST00000385133 98 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 AL356473.1-201ENST00000406203 1408 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 RNU2-42P-201ENST00000410697 113 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 MTND4P6-201ENST00000438297 472 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 MTND2P29-201ENST00000438595 412 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 SDCBPP1-201ENST00000440192 890 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 AC097493.1-201ENST00000463958 372 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms