Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RNU6-140P-201ENST00000384566 108 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 Y_RNA.619-201ENST00000410951 90 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 RPS3AP44-201ENST00000425466 790 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 C8orf59P1-201ENST00000429930 303 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 MTND4P25-201ENST00000441039 533 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 AC083798.1-201ENST00000472671 131 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 UBL5P3-201ENST00000475112 231 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 AC109925.1-201ENST00000478069 331 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 AC109927.2-201ENST00000506416 303 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 SNORA40.12-201ENST00000516329 111 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 Y_RNA.689-201ENST00000516589 107 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 Y_RNA.693-201ENST00000516641 110 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 RNU6-914P-201ENST00000516749 109 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 OR5AL2P-201ENST00000532185 920 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 GTF3AP2-201ENST00000557014 266 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 AC136619.2-201ENST00000563361 631 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 MIR4524B-201ENST00000581569 115 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 NRBF2P5-201ENST00000603087 788 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 AF250324.2-201ENST00000608299 610 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 FTX_3.1-201ENST00000610451 147 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 AC011155.2-201ENST00000623202 216 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 AL157786.1-207ENST00000627771 695 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 AC004972.1-201ENST00000623934 2209 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 AC007496.3-201ENST00000624987 3443 ntBASIC3.16□□□□□ -1.9
COL28A1Q2UY09 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 GABRG2-229ENST00000641017 3628 ntBASIC3.16□□□□□ -1.9
COL28A1Q2UY09 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 RNU6-270P-201ENST00000364131 105 ntBASIC3.16□□□□□ -1.9
COL28A1Q2UY09 RNU6-512P-201ENST00000364438 103 ntBASIC3.16□□□□□ -1.9
COL28A1Q2UY09 Y_RNA.576-201ENST00000384781 102 ntBASIC3.16□□□□□ -1.9
COL28A1Q2UY09 RNU6-1158P-201ENST00000391167 107 ntBASIC3.16□□□□□ -1.9
COL28A1Q2UY09 RNU2-9P-201ENST00000410194 145 ntBASIC3.16□□□□□ -1.9
COL28A1Q2UY09 RNA5SP508-201ENST00000411327 119 ntBASIC3.16□□□□□ -1.9
COL28A1Q2UY09 FCF1P9-201ENST00000412546 282 ntBASIC3.16□□□□□ -1.9
COL28A1Q2UY09 AC092809.3-201ENST00000415453 231 ntBASIC3.16□□□□□ -1.9
COL28A1Q2UY09 GPM6BP2-201ENST00000432046 144 ntBASIC3.16□□□□□ -1.9
COL28A1Q2UY09 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 AC010095.1-201ENST00000443543 144 ntBASIC3.16□□□□□ -1.9
COL28A1Q2UY09 AL357552.1-201ENST00000445254 415 ntBASIC3.16□□□□□ -1.9
COL28A1Q2UY09 GPM6BP1-201ENST00000446387 144 ntBASIC3.16□□□□□ -1.9
COL28A1Q2UY09 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 RNU7-63P-201ENST00000459054 62 ntBASIC3.16□□□□□ -1.9
COL28A1Q2UY09 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 RNU6-314P-201ENST00000516574 104 ntBASIC3.16□□□□□ -1.9
COL28A1Q2UY09 RNU6-143P-201ENST00000516942 93 ntBASIC3.16□□□□□ -1.9
COL28A1Q2UY09 RANP3-201ENST00000530970 276 ntBASIC3.16□□□□□ -1.9
COL28A1Q2UY09 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 AC008536.2-201ENST00000607284 349 ntBASIC3.16□□□□□ -1.9
COL28A1Q2UY09 AC130324.3-201ENST00000614165 542 ntBASIC3.16□□□□□ -1.9
COL28A1Q2UY09 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 U6.114-201ENST00000636407 96 ntBASIC3.16□□□□□ -1.9
COL28A1Q2UY09 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL28A1Q2UY09 AC010680.1-201ENST00000590024 3590 ntBASIC3.15□□□□□ -1.9
COL28A1Q2UY09 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.15□□□□□ -1.91
COL28A1Q2UY09 RNU6-517P-201ENST00000384362 110 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 MIR301A-201ENST00000385261 86 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 MIR591-201ENST00000385290 95 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 MIR888-201ENST00000401186 77 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 CIR1P3-201ENST00000405137 479 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 MRPL50P2-201ENST00000416821 482 ntBASIC3.15□□□□□ -1.91
COL28A1Q2UY09 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC3.15□□□□□ -1.91
COL28A1Q2UY09 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC3.15□□□□□ -1.91
COL28A1Q2UY09 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms