Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 HMGN1P28-201ENST00000521340 364 ntBASIC2.4□□□□□ -2.02
MSH6P52701 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC2.4□□□□□ -2.02
MSH6P52701 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.4□□□□□ -2.02
MSH6P52701 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC2.4□□□□□ -2.02
MSH6P52701 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.4□□□□□ -2.02
MSH6P52701 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC2.4□□□□□ -2.02
MSH6P52701 MTCO2P2-201ENST00000591258 225 ntBASIC2.4□□□□□ -2.02
MSH6P52701 RNU6-6P-201ENST00000606623 107 ntBASIC2.4□□□□□ -2.02
MSH6P52701 AC103710.4-201ENST00000609301 899 ntBASIC2.4□□□□□ -2.02
MSH6P52701 AC013476.2-201ENST00000614456 459 ntBASIC2.4□□□□□ -2.02
MSH6P52701 AC019226.1-201ENST00000625666 515 ntBASIC2.4□□□□□ -2.02
MSH6P52701 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.4□□□□□ -2.02
MSH6P52701 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
MSH6P52701 AL049641.1-201ENST00000441055 1948 ntBASIC2.4□□□□□ -2.03
MSH6P52701 RNU6-462P-201ENST00000362659 105 ntBASIC2.39□□□□□ -2.03
MSH6P52701 SNORA23-201ENST00000365128 182 ntBASIC2.39□□□□□ -2.03
MSH6P52701 RNU6-198P-201ENST00000384258 104 ntBASIC2.39□□□□□ -2.03
MSH6P52701 RNU6-1035P-201ENST00000384477 107 ntBASIC2.39□□□□□ -2.03
MSH6P52701 MIR627-201ENST00000384979 97 ntBASIC2.39□□□□□ -2.03
MSH6P52701 MIR325-201ENST00000385260 98 ntBASIC2.39□□□□□ -2.03
MSH6P52701 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
MSH6P52701 RNU6-516P-201ENST00000411381 104 ntBASIC2.39□□□□□ -2.03
MSH6P52701 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.39□□□□□ -2.03
MSH6P52701 Z85995.1-201ENST00000415547 335 ntBASIC2.39□□□□□ -2.03
MSH6P52701 AL358075.3-201ENST00000426289 226 ntBASIC2.39□□□□□ -2.03
MSH6P52701 AL365496.1-201ENST00000426885 215 ntBASIC2.39□□□□□ -2.03
MSH6P52701 AL590383.1-201ENST00000428602 75 ntBASIC2.39□□□□□ -2.03
MSH6P52701 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.39□□□□□ -2.03
MSH6P52701 AL645568.3-201ENST00000433683 316 ntBASIC2.39□□□□□ -2.03
MSH6P52701 UBE2V1P13-201ENST00000436983 439 ntBASIC2.39□□□□□ -2.03
MSH6P52701 AL714022.1-201ENST00000439897 151 ntBASIC2.39□□□□□ -2.03
MSH6P52701 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.39□□□□□ -2.03
MSH6P52701 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
MSH6P52701 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC2.39□□□□□ -2.03
MSH6P52701 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.39□□□□□ -2.03
MSH6P52701 DUXAP8-207ENST00000456786 622 ntBASIC2.39□□□□□ -2.03
MSH6P52701 AC116337.2-201ENST00000477662 156 ntBASIC2.39□□□□□ -2.03
MSH6P52701 RAC1P5-201ENST00000512182 576 ntBASIC2.39□□□□□ -2.03
MSH6P52701 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.39□□□□□ -2.03
MSH6P52701 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.39□□□□□ -2.03
MSH6P52701 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
MSH6P52701 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC2.39□□□□□ -2.03
MSH6P52701 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC2.39□□□□□ -2.03
MSH6P52701 MIR4448-201ENST00000584360 86 ntBASIC2.39□□□□□ -2.03
MSH6P52701 BNIP3P39-201ENST00000601077 554 ntBASIC2.39□□□□□ -2.03
MSH6P52701 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC2.39□□□□□ -2.03
MSH6P52701 AC009974.1-201ENST00000608881 455 ntBASIC2.39□□□□□ -2.03
MSH6P52701 AL161629.2-201ENST00000615347 275 ntBASIC2.39□□□□□ -2.03
MSH6P52701 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.39□□□□□ -2.03
MSH6P52701 OR5H6-203ENST00000642105 978 ntBASIC2.39□□□□□ -2.03
MSH6P52701 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.39□□□□□ -2.03
MSH6P52701 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
MSH6P52701 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.39□□□□□ -2.03
MSH6P52701 AC106754.1-201ENST00000562632 1513 ntBASIC2.39□□□□□ -2.03
MSH6P52701 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.39□□□□□ -2.03
MSH6P52701 ZNF519P1-201ENST00000449011 1626 ntBASIC2.39□□□□□ -2.03
MSH6P52701 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC2.38□□□□□ -2.03
MSH6P52701 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC2.38□□□□□ -2.03
MSH6P52701 RPL17P12-201ENST00000413391 526 ntBASIC2.38□□□□□ -2.03
MSH6P52701 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.38□□□□□ -2.03
MSH6P52701 HMGN2P38-201ENST00000423806 265 ntBASIC2.38□□□□□ -2.03
MSH6P52701 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC2.38□□□□□ -2.03
MSH6P52701 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.38□□□□□ -2.03
MSH6P52701 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.38□□□□□ -2.03
MSH6P52701 MTND3P1-201ENST00000441336 220 ntBASIC2.38□□□□□ -2.03
MSH6P52701 PAXBP1P1-201ENST00000449315 447 ntBASIC2.38□□□□□ -2.03
MSH6P52701 MTND2P24-201ENST00000453434 806 ntBASIC2.38□□□□□ -2.03
MSH6P52701 LARP1BP2-201ENST00000486594 519 ntBASIC2.38□□□□□ -2.03
MSH6P52701 AC135721.1-201ENST00000497954 479 ntBASIC2.38□□□□□ -2.03
MSH6P52701 CDC42P4-201ENST00000510507 563 ntBASIC2.38□□□□□ -2.03
MSH6P52701 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
MSH6P52701 NRON-201ENST00000517270 370 ntBASIC2.38□□□□□ -2.03
MSH6P52701 AC025755.1-201ENST00000521306 278 ntBASIC2.38□□□□□ -2.03
MSH6P52701 OR4R1P-201ENST00000529879 463 ntBASIC2.38□□□□□ -2.03
MSH6P52701 CBX3P4-201ENST00000538909 354 ntBASIC2.38□□□□□ -2.03
MSH6P52701 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC2.38□□□□□ -2.03
MSH6P52701 MIR3199-1-201ENST00000582434 88 ntBASIC2.38□□□□□ -2.03
MSH6P52701 AC098848.2-201ENST00000588023 330 ntBASIC2.38□□□□□ -2.03
MSH6P52701 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC2.38□□□□□ -2.03
MSH6P52701 U73023.1-201ENST00000603134 700 ntBASIC2.38□□□□□ -2.03
MSH6P52701 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2.38□□□□□ -2.03
MSH6P52701 OR4G3P-201ENST00000633500 913 ntBASIC2.38□□□□□ -2.03
MSH6P52701 AC007785.2-201ENST00000598627 1916 ntBASIC2.38□□□□□ -2.03
MSH6P52701 AC135776.4-201ENST00000624300 1904 ntBASIC2.38□□□□□ -2.03
MSH6P52701 AL138713.1-201ENST00000624026 2130 ntBASIC2.38□□□□□ -2.03
MSH6P52701 DDX10P1-201ENST00000448545 1933 ntBASIC2.38□□□□□ -2.03
MSH6P52701 AC009902.3-201ENST00000606235 2172 ntBASIC2.38□□□□□ -2.03
MSH6P52701 AL590084.2-201ENST00000401481 382 ntBASIC2.37□□□□□ -2.03
MSH6P52701 RNU6-584P-201ENST00000410350 95 ntBASIC2.37□□□□□ -2.03
MSH6P52701 PIGPP2-201ENST00000411569 458 ntBASIC2.37□□□□□ -2.03
MSH6P52701 POLHP1-201ENST00000411806 470 ntBASIC2.37□□□□□ -2.03
MSH6P52701 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC2.37□□□□□ -2.03
MSH6P52701 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC2.37□□□□□ -2.03
MSH6P52701 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.37□□□□□ -2.03
MSH6P52701 RPL7L1P10-201ENST00000427790 463 ntBASIC2.37□□□□□ -2.03
MSH6P52701 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC2.37□□□□□ -2.03
MSH6P52701 USP9YP15-201ENST00000442391 422 ntBASIC2.37□□□□□ -2.03
MSH6P52701 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.37□□□□□ -2.03
MSH6P52701 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.37□□□□□ -2.03
MSH6P52701 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms