Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.57□□□□□ -1.68
LIG3P49916 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.57□□□□□ -1.68
LIG3P49916 AC008121.1-201ENST00000603244 268 ntBASIC4.57□□□□□ -1.68
LIG3P49916 AC025946.2-201ENST00000603398 234 ntBASIC4.57□□□□□ -1.68
LIG3P49916 AL021879.1-201ENST00000611756 288 ntBASIC4.57□□□□□ -1.68
LIG3P49916 AP005019.3-201ENST00000620418 560 ntBASIC4.57□□□□□ -1.68
LIG3P49916 AC112200.1-201ENST00000625015 234 ntBASIC4.57□□□□□ -1.68
LIG3P49916 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.57□□□□□ -1.68
LIG3P49916 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
LIG3P49916 RAD17P1-201ENST00000418130 2042 ntBASIC4.56□□□□□ -1.68
LIG3P49916 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.56□□□□□ -1.68
LIG3P49916 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
LIG3P49916 FAM35DP-201ENST00000323387 2712 ntBASIC4.56□□□□□ -1.68
LIG3P49916 Y_RNA.126-201ENST00000363382 111 ntBASIC4.56□□□□□ -1.68
LIG3P49916 RNU4-42P-201ENST00000364738 142 ntBASIC4.56□□□□□ -1.68
LIG3P49916 MIR521-1-201ENST00000384902 87 ntBASIC4.56□□□□□ -1.68
LIG3P49916 SNORA40C-201ENST00000391285 128 ntBASIC4.56□□□□□ -1.68
LIG3P49916 SDHCP2-201ENST00000398565 501 ntBASIC4.56□□□□□ -1.68
LIG3P49916 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC4.56□□□□□ -1.68
LIG3P49916 RPL7AP25-201ENST00000423357 805 ntBASIC4.56□□□□□ -1.68
LIG3P49916 RPS12P10-201ENST00000427031 377 ntBASIC4.56□□□□□ -1.68
LIG3P49916 AC087650.1-201ENST00000431445 468 ntBASIC4.56□□□□□ -1.68
LIG3P49916 RPL23AP45-201ENST00000476406 468 ntBASIC4.56□□□□□ -1.68
LIG3P49916 AC017037.1-201ENST00000508460 471 ntBASIC4.56□□□□□ -1.68
LIG3P49916 Vault.1-201ENST00000516474 102 ntBASIC4.56□□□□□ -1.68
LIG3P49916 MIR2114-201ENST00000516645 80 ntBASIC4.56□□□□□ -1.68
LIG3P49916 RNU6-1271P-201ENST00000517049 105 ntBASIC4.56□□□□□ -1.68
LIG3P49916 RNA5SP165-201ENST00000517142 115 ntBASIC4.56□□□□□ -1.68
LIG3P49916 AC109479.2-201ENST00000517842 174 ntBASIC4.56□□□□□ -1.68
LIG3P49916 AC131281.1-201ENST00000522984 164 ntBASIC4.56□□□□□ -1.68
LIG3P49916 TRAV28-201ENST00000557548 323 ntBASIC4.56□□□□□ -1.68
LIG3P49916 MYL12BP1-201ENST00000569826 507 ntBASIC4.56□□□□□ -1.68
LIG3P49916 HMGB1P50-201ENST00000605814 607 ntBASIC4.56□□□□□ -1.68
LIG3P49916 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
LIG3P49916 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.56□□□□□ -1.68
LIG3P49916 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.56□□□□□ -1.68
LIG3P49916 AC125257.1-201ENST00000560400 2930 ntBASIC4.56□□□□□ -1.68
LIG3P49916 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.56□□□□□ -1.68
LIG3P49916 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.56□□□□□ -1.68
LIG3P49916 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
LIG3P49916 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
LIG3P49916 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.56□□□□□ -1.68
LIG3P49916 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
LIG3P49916 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
LIG3P49916 MTND5P27-201ENST00000428871 1720 ntBASIC4.55□□□□□ -1.68
LIG3P49916 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.55□□□□□ -1.68
LIG3P49916 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
LIG3P49916 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
LIG3P49916 Y_RNA.106-201ENST00000363189 100 ntBASIC4.55□□□□□ -1.68
LIG3P49916 RNA5SP447-201ENST00000363749 119 ntBASIC4.55□□□□□ -1.68
LIG3P49916 U3.22-201ENST00000391120 215 ntBASIC4.55□□□□□ -1.68
LIG3P49916 MIR1252-201ENST00000408861 65 ntBASIC4.55□□□□□ -1.68
LIG3P49916 MORN2-203ENST00000409131 544 ntTSL 5 BASIC4.55□□□□□ -1.68
LIG3P49916 RNU2-68P-201ENST00000410878 191 ntBASIC4.55□□□□□ -1.68
LIG3P49916 EIF4EP2-201ENST00000422816 654 ntBASIC4.55□□□□□ -1.68
LIG3P49916 AC007560.1-201ENST00000426912 237 ntBASIC4.55□□□□□ -1.68
LIG3P49916 AC009237.8-201ENST00000445492 379 ntBASIC4.55□□□□□ -1.68
LIG3P49916 SLC25A15P5-201ENST00000508033 253 ntBASIC4.55□□□□□ -1.68
LIG3P49916 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.55□□□□□ -1.68
LIG3P49916 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.55□□□□□ -1.68
LIG3P49916 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.55□□□□□ -1.68
LIG3P49916 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
LIG3P49916 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.55□□□□□ -1.68
LIG3P49916 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.55□□□□□ -1.68
LIG3P49916 HMGB1P14-201ENST00000557424 591 ntBASIC4.55□□□□□ -1.68
LIG3P49916 AL360157.1-201ENST00000565962 87 ntBASIC4.55□□□□□ -1.68
LIG3P49916 MIR5188-201ENST00000583467 113 ntBASIC4.55□□□□□ -1.68
LIG3P49916 AL161629.2-201ENST00000615347 275 ntBASIC4.55□□□□□ -1.68
LIG3P49916 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.55□□□□□ -1.68
LIG3P49916 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.55□□□□□ -1.68
LIG3P49916 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.55□□□□□ -1.68
LIG3P49916 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.55□□□□□ -1.68
LIG3P49916 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
LIG3P49916 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.55□□□□□ -1.68
LIG3P49916 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
LIG3P49916 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
LIG3P49916 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.54□□□□□ -1.68
LIG3P49916 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
LIG3P49916 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.54□□□□□ -1.68
LIG3P49916 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
LIG3P49916 ZNF299P-201ENST00000406845 1804 ntBASIC4.54□□□□□ -1.68
LIG3P49916 AC007685.1-201ENST00000329806 452 ntBASIC4.54□□□□□ -1.68
LIG3P49916 Y_RNA.476-201ENST00000384347 108 ntBASIC4.54□□□□□ -1.68
LIG3P49916 Y_RNA.533-201ENST00000384596 114 ntBASIC4.54□□□□□ -1.68
LIG3P49916 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
LIG3P49916 RNU6-907P-201ENST00000390924 102 ntBASIC4.54□□□□□ -1.68
LIG3P49916 ELOCP19-201ENST00000411919 318 ntBASIC4.54□□□□□ -1.68
LIG3P49916 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.54□□□□□ -1.68
LIG3P49916 AL117339.3-201ENST00000418733 162 ntBASIC4.54□□□□□ -1.68
LIG3P49916 RPL21P66-201ENST00000426566 466 ntBASIC4.54□□□□□ -1.68
LIG3P49916 AL078601.1-201ENST00000444542 271 ntBASIC4.54□□□□□ -1.68
LIG3P49916 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.54□□□□□ -1.68
LIG3P49916 ANP32BP2-201ENST00000454525 545 ntBASIC4.54□□□□□ -1.68
LIG3P49916 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.54□□□□□ -1.68
LIG3P49916 RPL21P126-201ENST00000470049 478 ntBASIC4.54□□□□□ -1.68
LIG3P49916 AC078918.1-201ENST00000498515 228 ntBASIC4.54□□□□□ -1.68
LIG3P49916 NDUFB4P9-201ENST00000511646 388 ntBASIC4.54□□□□□ -1.68
LIG3P49916 AC144568.1-201ENST00000520139 137 ntBASIC4.54□□□□□ -1.68
LIG3P49916 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.54□□□□□ -1.68
LIG3P49916 AC004584.2-201ENST00000570407 410 ntBASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms