Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 MTND4P2-201ENST00000507767 1203 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 AC113155.1-201ENST00000511141 769 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 MRPS36P2-201ENST00000512569 299 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.62□□□□□ -1.99
TNFRSF4P43489 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.62□□□□□ -1.99
TNFRSF4P43489 RNA5SP24-201ENST00000516478 95 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 AC109329.2-201ENST00000519658 482 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.62□□□□□ -1.99
TNFRSF4P43489 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
TNFRSF4P43489 ARL2BPP2-201ENST00000550907 489 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 NACAP3-201ENST00000552100 481 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 AC006362.1-201ENST00000567392 174 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 SEPT7P9-203ENST00000604116 343 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 AC007621.1-201ENST00000604544 437 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 RNU6-87P-201ENST00000607561 108 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 AC013562.2-201ENST00000611632 603 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 DUSP12P1-201ENST00000612874 516 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 AC010678.1-201ENST00000614118 713 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
TNFRSF4P43489 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.62□□□□□ -1.99
TNFRSF4P43489 AL137003.2-201ENST00000606924 2538 ntBASIC2.62□□□□□ -1.99
TNFRSF4P43489 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.61□□□□□ -1.99
TNFRSF4P43489 Y_RNA.201-201ENST00000364052 96 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 RNU1-73P-201ENST00000383971 164 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 Y_RNA.553-201ENST00000384670 102 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 MIR887-201ENST00000401258 79 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 RNU2-49P-201ENST00000410666 184 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 RPL26P27-201ENST00000414397 437 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 AC119618.1-201ENST00000434191 222 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC2.61□□□□□ -1.99
TNFRSF4P43489 USP9YP29-201ENST00000445112 563 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.61□□□□□ -1.99
TNFRSF4P43489 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.61□□□□□ -1.99
TNFRSF4P43489 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.61□□□□□ -1.99
TNFRSF4P43489 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.61□□□□□ -1.99
TNFRSF4P43489 RPS27AP10-201ENST00000496103 208 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC2.61□□□□□ -1.99
TNFRSF4P43489 RN7SKP24-201ENST00000515888 284 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 RNA5SP320-201ENST00000516263 124 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 RNU6-143P-201ENST00000516942 93 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.61□□□□□ -1.99
TNFRSF4P43489 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.61□□□□□ -1.99
TNFRSF4P43489 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC2.61□□□□□ -1.99
TNFRSF4P43489 NDUFAF4P1-201ENST00000559425 519 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.61□□□□□ -1.99
TNFRSF4P43489 AC137800.2-201ENST00000574375 120 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 AC009977.1-201ENST00000586015 570 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 AL355598.1-201ENST00000604169 202 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 AC104763.2-201ENST00000604179 382 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 AC007363.1-201ENST00000604736 620 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 AC103710.2-201ENST00000609912 942 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 AC138749.5-201ENST00000611461 208 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 MIR6715A-201ENST00000615929 79 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 AC116165.2-201ENST00000616705 206 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 AC108479.2-201ENST00000617314 601 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 CR381653.2-201ENST00000624041 768 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.61□□□□□ -1.99
TNFRSF4P43489 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
TNFRSF4P43489 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.61□□□□□ -1.99
TNFRSF4P43489 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
TNFRSF4P43489 AC110491.1-201ENST00000562191 2010 ntBASIC2.61□□□□□ -1.99
TNFRSF4P43489 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
TNFRSF4P43489 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.6□□□□□ -1.99
TNFRSF4P43489 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
TNFRSF4P43489 MTND5P19-201ENST00000424872 1794 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
TNFRSF4P43489 RNU6-778P-201ENST00000363269 103 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
TNFRSF4P43489 RPS4XP7-201ENST00000406274 780 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 MIR1261-201ENST00000408659 82 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC2.6□□□□□ -1.99
TNFRSF4P43489 BMS1P22-201ENST00000414726 313 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC2.6□□□□□ -1.99
TNFRSF4P43489 BPY2DP-201ENST00000422208 265 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.6□□□□□ -1.99
TNFRSF4P43489 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC2.6□□□□□ -1.99
TNFRSF4P43489 AC137499.1-201ENST00000427602 88 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC2.6□□□□□ -1.99
TNFRSF4P43489 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC2.6□□□□□ -1.99
TNFRSF4P43489 AL022238.1-201ENST00000442557 355 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 MTCO1P19-201ENST00000443487 500 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 UBBP3-201ENST00000445497 241 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 MTND1P29-201ENST00000448112 647 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.6□□□□□ -1.99
TNFRSF4P43489 AL033528.1-201ENST00000453780 140 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 snoU109.1-201ENST00000459339 135 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 MTND1P3-201ENST00000484956 952 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 RNU1-41P-201ENST00000516161 162 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 RNU1-48P-201ENST00000516400 162 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 RNU6-1092P-201ENST00000516955 87 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 AP003181.2-201ENST00000528941 181 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 TRAV37-201ENST00000553906 342 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 RPL21P5-201ENST00000554662 472 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.6□□□□□ -1.99
TNFRSF4P43489 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.6□□□□□ -1.99
TNFRSF4P43489 MIR3611-201ENST00000584484 83 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 AC005771.1-201ENST00000585581 349 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 HMGN1P30-201ENST00000589286 268 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 AC040904.1-201ENST00000590850 223 ntBASIC2.6□□□□□ -1.99
TNFRSF4P43489 AC019159.1-201ENST00000605094 187 ntBASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 168.2 ms