Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RNU6-101P-201ENST00000410323 104 ntBASIC3.85□□□□□ -1.79
MSX2P35548 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
MSX2P35548 RPL7AP73-201ENST00000413490 353 ntBASIC3.85□□□□□ -1.79
MSX2P35548 SYF2P2-201ENST00000417620 583 ntBASIC3.85□□□□□ -1.79
MSX2P35548 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.85□□□□□ -1.79
MSX2P35548 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.85□□□□□ -1.79
MSX2P35548 AL358472.1-201ENST00000431295 329 ntBASIC3.85□□□□□ -1.79
MSX2P35548 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.85□□□□□ -1.79
MSX2P35548 AC006011.1-201ENST00000442758 349 ntBASIC3.85□□□□□ -1.79
MSX2P35548 AL360271.2-201ENST00000447710 161 ntBASIC3.85□□□□□ -1.79
MSX2P35548 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC3.85□□□□□ -1.79
MSX2P35548 AL162591.2-201ENST00000449634 317 ntBASIC3.85□□□□□ -1.79
MSX2P35548 AL353752.1-201ENST00000454946 260 ntBASIC3.85□□□□□ -1.79
MSX2P35548 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.85□□□□□ -1.79
MSX2P35548 RPL37P6-201ENST00000460682 294 ntBASIC3.85□□□□□ -1.79
MSX2P35548 RN7SL93P-201ENST00000463035 293 ntBASIC3.85□□□□□ -1.79
MSX2P35548 AC068781.1-201ENST00000488231 618 ntBASIC3.85□□□□□ -1.79
MSX2P35548 SLC25A15P5-201ENST00000508033 253 ntBASIC3.85□□□□□ -1.79
MSX2P35548 AC008489.1-201ENST00000524271 483 ntBASIC3.85□□□□□ -1.79
MSX2P35548 BNIP3P5-201ENST00000562290 498 ntBASIC3.85□□□□□ -1.79
MSX2P35548 AC005951.2-201ENST00000576282 495 ntBASIC3.85□□□□□ -1.79
MSX2P35548 AC022655.2-201ENST00000577280 318 ntBASIC3.85□□□□□ -1.79
MSX2P35548 RN7SL690P-201ENST00000582087 240 ntBASIC3.85□□□□□ -1.79
MSX2P35548 AL355297.3-201ENST00000604082 446 ntBASIC3.85□□□□□ -1.79
MSX2P35548 AL353748.2-201ENST00000622148 471 ntBASIC3.85□□□□□ -1.79
MSX2P35548 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
MSX2P35548 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
MSX2P35548 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
MSX2P35548 PRO1804-201ENST00000623780 2050 ntBASIC3.85□□□□□ -1.79
MSX2P35548 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
MSX2P35548 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
MSX2P35548 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
MSX2P35548 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
MSX2P35548 AC139713.2-214ENST00000642059 1811 ntBASIC3.84□□□□□ -1.79
MSX2P35548 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.84□□□□□ -1.79
MSX2P35548 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.84□□□□□ -1.79
MSX2P35548 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
MSX2P35548 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.84□□□□□ -1.79
MSX2P35548 Y_RNA.126-201ENST00000363382 111 ntBASIC3.84□□□□□ -1.79
MSX2P35548 RNU6-76P-201ENST00000384060 104 ntBASIC3.84□□□□□ -1.79
MSX2P35548 RNU6-882P-201ENST00000391025 103 ntBASIC3.84□□□□□ -1.79
MSX2P35548 HMGN2P8-201ENST00000391458 268 ntBASIC3.84□□□□□ -1.79
MSX2P35548 MIR1183-201ENST00000408856 89 ntBASIC3.84□□□□□ -1.79
MSX2P35548 RPL21P90-201ENST00000415692 466 ntBASIC3.84□□□□□ -1.79
MSX2P35548 BX842559.1-201ENST00000419615 532 ntBASIC3.84□□□□□ -1.79
MSX2P35548 RPL23AP50-201ENST00000434149 455 ntBASIC3.84□□□□□ -1.79
MSX2P35548 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.84□□□□□ -1.79
MSX2P35548 PRDX3P3-201ENST00000447765 522 ntBASIC3.84□□□□□ -1.79
MSX2P35548 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC3.84□□□□□ -1.79
MSX2P35548 RN7SL385P-201ENST00000468873 276 ntBASIC3.84□□□□□ -1.79
MSX2P35548 AC104564.1-201ENST00000493028 407 ntBASIC3.84□□□□□ -1.79
MSX2P35548 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.84□□□□□ -1.79
MSX2P35548 RNU2-58P-201ENST00000516403 183 ntBASIC3.84□□□□□ -1.79
MSX2P35548 RNU6-1073P-201ENST00000517182 106 ntBASIC3.84□□□□□ -1.79
MSX2P35548 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
MSX2P35548 AC087369.1-201ENST00000520775 996 ntBASIC3.84□□□□□ -1.79
MSX2P35548 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC3.84□□□□□ -1.79
MSX2P35548 TRAV8-5-201ENST00000537369 341 ntBASIC3.84□□□□□ -1.79
MSX2P35548 AC109446.1-201ENST00000566172 220 ntBASIC3.84□□□□□ -1.79
MSX2P35548 AC068790.4-201ENST00000602474 263 ntBASIC3.84□□□□□ -1.79
MSX2P35548 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC3.84□□□□□ -1.79
MSX2P35548 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.84□□□□□ -1.79
MSX2P35548 AC062037.2-201ENST00000610137 73 ntBASIC3.84□□□□□ -1.79
MSX2P35548 AL021879.1-201ENST00000611756 288 ntBASIC3.84□□□□□ -1.79
MSX2P35548 AL591424.2-201ENST00000617023 128 ntBASIC3.84□□□□□ -1.79
MSX2P35548 MIR6758-201ENST00000620653 63 ntBASIC3.84□□□□□ -1.79
MSX2P35548 AC112200.1-201ENST00000625015 234 ntBASIC3.84□□□□□ -1.79
MSX2P35548 AC140479.6-201ENST00000633535 357 ntBASIC3.84□□□□□ -1.79
MSX2P35548 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.84□□□□□ -1.8
MSX2P35548 IPO8P1-201ENST00000455509 3109 ntBASIC3.84□□□□□ -1.8
MSX2P35548 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
MSX2P35548 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.83□□□□□ -1.8
MSX2P35548 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
MSX2P35548 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.83□□□□□ -1.8
MSX2P35548 UBE3AP2-201ENST00000429033 2259 ntBASIC3.83□□□□□ -1.8
MSX2P35548 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
MSX2P35548 AC079741.1-201ENST00000321498 212 ntBASIC3.83□□□□□ -1.8
MSX2P35548 Y_RNA.39-201ENST00000362620 98 ntBASIC3.83□□□□□ -1.8
MSX2P35548 RNU1-18P-201ENST00000363062 164 ntBASIC3.83□□□□□ -1.8
MSX2P35548 Y_RNA.380-201ENST00000365663 111 ntBASIC3.83□□□□□ -1.8
MSX2P35548 RNU6-1074P-201ENST00000383995 104 ntBASIC3.83□□□□□ -1.8
MSX2P35548 Y_RNA.534-201ENST00000384599 112 ntBASIC3.83□□□□□ -1.8
MSX2P35548 MIR578-201ENST00000384828 96 ntBASIC3.83□□□□□ -1.8
MSX2P35548 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.83□□□□□ -1.8
MSX2P35548 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.83□□□□□ -1.8
MSX2P35548 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.83□□□□□ -1.8
MSX2P35548 AL133396.1-201ENST00000432048 687 ntBASIC3.83□□□□□ -1.8
MSX2P35548 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC3.83□□□□□ -1.8
MSX2P35548 PHBP16-201ENST00000446318 950 ntBASIC3.83□□□□□ -1.8
MSX2P35548 RPL9P32-201ENST00000464118 620 ntBASIC3.83□□□□□ -1.8
MSX2P35548 MTND3P25-201ENST00000509243 135 ntBASIC3.83□□□□□ -1.8
MSX2P35548 RNA5SP49-201ENST00000516450 115 ntBASIC3.83□□□□□ -1.8
MSX2P35548 RNA5SP309-201ENST00000516670 106 ntBASIC3.83□□□□□ -1.8
MSX2P35548 RNU6-914P-201ENST00000516749 109 ntBASIC3.83□□□□□ -1.8
MSX2P35548 AC022616.4-201ENST00000522985 181 ntBASIC3.83□□□□□ -1.8
MSX2P35548 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.83□□□□□ -1.8
MSX2P35548 AC093227.2-201ENST00000589357 285 ntBASIC3.83□□□□□ -1.8
MSX2P35548 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.83□□□□□ -1.8
MSX2P35548 U2.1-201ENST00000618978 145 ntBASIC3.83□□□□□ -1.8
MSX2P35548 AC015967.1-201ENST00000619893 476 ntBASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms