Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 GTF2IP13-201ENST00000438487 386 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 AC020550.1-201ENST00000447385 163 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 HMGN2P16-201ENST00000456802 261 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 RN7SL807P-201ENST00000470923 297 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 AC010631.1-201ENST00000474150 156 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 AC083904.1-201ENST00000487828 231 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXD9P28356 AC108078.2-201ENST00000510750 236 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXD9P28356 OR11H5P-201ENST00000554039 926 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 AC020661.2-201ENST00000560114 134 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 AC093249.1-201ENST00000567049 203 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXD9P28356 MIR3200-201ENST00000580767 85 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 AC008521.1-201ENST00000587471 187 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXD9P28356 AP001330.4-201ENST00000604350 154 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 Z82243.1-201ENST00000609432 473 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 AC134503.1-201ENST00000633048 54 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXD9P28356 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXD9P28356 Z83843.1-201ENST00000604070 3685 ntBASIC3.46□□□□□ -1.86
HOXD9P28356 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
HOXD9P28356 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
HOXD9P28356 AL672296.1-201ENST00000427780 2158 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HOXD9P28356 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC3.45□□□□□ -1.86
HOXD9P28356 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HOXD9P28356 SNORD42.2-201ENST00000365570 69 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 RNU6-946P-201ENST00000383878 107 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 RNU6-550P-201ENST00000391057 101 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 VN1R36P-201ENST00000414936 291 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 MTCO1P39-201ENST00000426148 480 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.45□□□□□ -1.86
HOXD9P28356 AL158071.1-201ENST00000430315 461 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 RPS3AP52-201ENST00000435639 297 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 AL121871.1-201ENST00000443413 436 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.45□□□□□ -1.86
HOXD9P28356 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD9P28356 RPL23AP31-201ENST00000456160 467 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXD9P28356 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD9P28356 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.45□□□□□ -1.86
HOXD9P28356 LIAS-206ENST00000513731 826 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXD9P28356 RNU6-1038P-201ENST00000516516 104 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 RNA5SP468-201ENST00000516782 93 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 AC090136.1-201ENST00000520009 240 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 AC090281.1-201ENST00000523019 276 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD9P28356 AP000889.2-201ENST00000532684 490 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC3.45□□□□□ -1.86
HOXD9P28356 SYF2P1-201ENST00000550658 413 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 MIR5583-1-201ENST00000580941 59 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 AC174048.1-201ENST00000603389 144 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 YPEL5P2-201ENST00000605553 359 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 AL133215.3-201ENST00000609801 448 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 AC004696.1-201ENST00000614345 607 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 AL353748.2-201ENST00000622148 471 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 AC110801.1-201ENST00000623590 212 ntBASIC3.45□□□□□ -1.86
HOXD9P28356 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.45□□□□□ -1.86
HOXD9P28356 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXD9P28356 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
HOXD9P28356 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXD9P28356 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
HOXD9P28356 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXD9P28356 Y_RNA.128-201ENST00000363391 112 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 SNORD113-7-201ENST00000363762 77 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 RNU6-173P-201ENST00000364215 104 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 Y_RNA.259-201ENST00000364619 101 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD9P28356 RNU6-43P-201ENST00000384302 107 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 MIR548K-201ENST00000408406 116 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 POLHP1-201ENST00000411806 470 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 RPL30P2-201ENST00000414021 291 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD9P28356 CYP4F29P-201ENST00000420685 446 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 AC093106.2-201ENST00000428212 385 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXD9P28356 Z75741.1-201ENST00000446793 314 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD9P28356 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD9P28356 CEACAMP4-201ENST00000457676 421 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 Y_RNA.639-201ENST00000458981 102 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 RPL21P8-201ENST00000465083 535 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXD9P28356 AC012181.1-201ENST00000479895 423 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 TRBVA-201ENST00000498804 316 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXD9P28356 AC026801.2-201ENST00000515352 425 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 SNORA31.8-201ENST00000516327 108 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 RNU6-1088P-201ENST00000516850 104 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXD9P28356 AC093012.1-202ENST00000549403 582 ntBASIC3.44□□□□□ -1.86
HOXD9P28356 FRG2DP-202ENST00000566967 323 ntBASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 117 ms