Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC4.49□□□□□ -1.69
COL8A1P27658 RPL12P39-201ENST00000455456 496 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 Y_RNA.637-201ENST00000459424 114 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.49□□□□□ -1.69
COL8A1P27658 AC023424.1-201ENST00000496058 459 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 HIGD1AP3-201ENST00000515857 278 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 RNA5SP464-201ENST00000516251 108 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 RNU6-537P-201ENST00000517277 103 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 FTH1P11-201ENST00000517577 551 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 IGKV2D-36-201ENST00000518643 226 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 AC109810.1-201ENST00000534066 224 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 AP001880.2-201ENST00000538233 448 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 AC137627.1-201ENST00000545761 289 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 AC106785.1-201ENST00000565935 262 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 AC034105.4-201ENST00000568304 277 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.49□□□□□ -1.69
COL8A1P27658 MIR5695-201ENST00000579717 85 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 MIR4429-201ENST00000580105 73 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 AC002545.1-201ENST00000592511 181 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.49□□□□□ -1.69
COL8A1P27658 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.49□□□□□ -1.69
COL8A1P27658 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC4.49□□□□□ -1.69
COL8A1P27658 THAP12P5-201ENST00000405864 2275 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
COL8A1P27658 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
COL8A1P27658 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
COL8A1P27658 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL8A1P27658 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC4.49□□□□□ -1.69
COL8A1P27658 AC009541.1-201ENST00000438279 2662 ntBASIC4.49□□□□□ -1.69
COL8A1P27658 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC4.49□□□□□ -1.69
COL8A1P27658 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
COL8A1P27658 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.48□□□□□ -1.69
COL8A1P27658 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL8A1P27658 AC008079.2-201ENST00000623543 20396 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
COL8A1P27658 AL022322.2-201ENST00000624072 20397 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL8A1P27658 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
COL8A1P27658 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC4.48□□□□□ -1.69
COL8A1P27658 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC4.48□□□□□ -1.69
COL8A1P27658 RNU6-1155P-201ENST00000363554 107 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 SNORA25.7-201ENST00000364375 127 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 RNU6-1180P-201ENST00000364935 107 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.48□□□□□ -1.69
COL8A1P27658 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
COL8A1P27658 Y_RNA.388-201ENST00000383919 113 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 SNORA66-201ENST00000384792 133 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 MT-TC-201ENST00000387405 66 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 RNU6-1275P-201ENST00000391087 107 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 RPL21P67-201ENST00000402896 478 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 RAB9AP3-201ENST00000412737 573 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 AL627311.1-201ENST00000431514 115 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC4.48□□□□□ -1.69
COL8A1P27658 RPS29P10-201ENST00000439197 166 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 EEF1A1P1-201ENST00000447052 739 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 RAB9AP1-201ENST00000449393 573 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC4.48□□□□□ -1.69
COL8A1P27658 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC4.48□□□□□ -1.69
COL8A1P27658 AC010618.1-201ENST00000469924 477 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.48□□□□□ -1.69
COL8A1P27658 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.48□□□□□ -1.69
COL8A1P27658 AC084851.1-201ENST00000529105 249 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.48□□□□□ -1.69
COL8A1P27658 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC4.48□□□□□ -1.69
COL8A1P27658 AC105254.2-201ENST00000603636 436 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 AC108081.1-201ENST00000604358 221 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 AL360181.4-201ENST00000621752 134 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 AC048347.1-201ENST00000624621 427 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.48□□□□□ -1.69
COL8A1P27658 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL8A1P27658 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL8A1P27658 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.48□□□□□ -1.69
COL8A1P27658 AF127577.6-201ENST00000623352 2191 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
COL8A1P27658 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
COL8A1P27658 AL353743.1-202ENST00000431724 1695 ntBASIC4.48□□□□□ -1.69
COL8A1P27658 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.48□□□□□ -1.69
COL8A1P27658 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
COL8A1P27658 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
COL8A1P27658 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL8A1P27658 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC4.47□□□□□ -1.69
COL8A1P27658 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
COL8A1P27658 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL8A1P27658 RNU6-137P-201ENST00000363680 108 ntBASIC4.47□□□□□ -1.69
COL8A1P27658 SNORA72.2-201ENST00000365028 127 ntBASIC4.47□□□□□ -1.69
COL8A1P27658 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL8A1P27658 SNORA40.5-201ENST00000391061 128 ntBASIC4.47□□□□□ -1.69
COL8A1P27658 RN7SKP100-201ENST00000411258 284 ntBASIC4.47□□□□□ -1.69
COL8A1P27658 RPL7AP61-201ENST00000443410 636 ntBASIC4.47□□□□□ -1.69
COL8A1P27658 AL354710.1-201ENST00000453641 246 ntBASIC4.47□□□□□ -1.69
COL8A1P27658 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC4.47□□□□□ -1.69
COL8A1P27658 AC012158.1-204ENST00000483430 465 ntBASIC4.47□□□□□ -1.69
COL8A1P27658 AC010265.1-201ENST00000513509 211 ntBASIC4.47□□□□□ -1.69
COL8A1P27658 GMPSP1-201ENST00000514075 579 ntBASIC4.47□□□□□ -1.69
COL8A1P27658 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
COL8A1P27658 RN7SKP276-201ENST00000516242 268 ntBASIC4.47□□□□□ -1.69
COL8A1P27658 RNA5SP43-201ENST00000516559 110 ntBASIC4.47□□□□□ -1.69
COL8A1P27658 AC021269.2-201ENST00000532318 330 ntBASIC4.47□□□□□ -1.69
COL8A1P27658 AC007224.1-201ENST00000564410 144 ntBASIC4.47□□□□□ -1.69
COL8A1P27658 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms