Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
MSH5O43196 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC8.31□□□□□ -1.08
MSH5O43196 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC8.31□□□□□ -1.08
MSH5O43196 AC094019.1-201ENST00000434678 472 ntBASIC8.31□□□□□ -1.08
MSH5O43196 SPINT5P-201ENST00000448174 155 ntBASIC8.31□□□□□ -1.08
MSH5O43196 AC000111.2-201ENST00000448200 210 ntBASIC8.31□□□□□ -1.08
MSH5O43196 RPL23AP63-201ENST00000498752 471 ntBASIC8.31□□□□□ -1.08
MSH5O43196 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC8.31□□□□□ -1.08
MSH5O43196 RNU6-448P-201ENST00000517052 107 ntBASIC8.31□□□□□ -1.08
MSH5O43196 RNA5SP340-201ENST00000517132 107 ntBASIC8.31□□□□□ -1.08
MSH5O43196 MIR4439-201ENST00000583746 80 ntBASIC8.31□□□□□ -1.08
MSH5O43196 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC8.31□□□□□ -1.08
MSH5O43196 SNORD98-201ENST00000636377 67 ntBASIC8.31□□□□□ -1.08
MSH5O43196 AL049767.1-202ENST00000637826 242 ntBASIC8.31□□□□□ -1.08
MSH5O43196 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSH5O43196 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSH5O43196 ADAM3A-203ENST00000461344 2157 ntBASIC8.31□□□□□ -1.08
MSH5O43196 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC8.31□□□□□ -1.08
MSH5O43196 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC8.3□□□□□ -1.08
MSH5O43196 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC8.3□□□□□ -1.08
MSH5O43196 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
MSH5O43196 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC8.3□□□□□ -1.08
MSH5O43196 RNU6ATAC28P-201ENST00000459249 118 ntBASIC8.3□□□□□ -1.08
MSH5O43196 AC108022.1-201ENST00000493466 478 ntBASIC8.3□□□□□ -1.08
MSH5O43196 RFPL4AP5-201ENST00000514977 504 ntBASIC8.3□□□□□ -1.08
MSH5O43196 HSPE1P18-201ENST00000517602 280 ntBASIC8.3□□□□□ -1.08
MSH5O43196 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC8.3□□□□□ -1.08
MSH5O43196 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC8.3□□□□□ -1.08
MSH5O43196 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC8.3□□□□□ -1.08
MSH5O43196 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
MSH5O43196 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
MSH5O43196 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
MSH5O43196 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
MSH5O43196 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
MSH5O43196 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC8.29□□□□□ -1.08
MSH5O43196 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC8.29□□□□□ -1.08
MSH5O43196 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
MSH5O43196 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC8.29□□□□□ -1.08
MSH5O43196 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
MSH5O43196 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
MSH5O43196 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
MSH5O43196 RNA5-8SP4-201ENST00000365096 150 ntBASIC8.29□□□□□ -1.08
MSH5O43196 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
MSH5O43196 EI24P2-201ENST00000397776 1076 ntBASIC8.29□□□□□ -1.08
MSH5O43196 RNA5SP511-201ENST00000410487 115 ntBASIC8.29□□□□□ -1.08
MSH5O43196 BX510359.3-201ENST00000422168 306 ntBASIC8.29□□□□□ -1.08
MSH5O43196 RNU1-131P-201ENST00000458943 161 ntBASIC8.29□□□□□ -1.08
MSH5O43196 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC8.29□□□□□ -1.08
MSH5O43196 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC8.29□□□□□ -1.08
MSH5O43196 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
MSH5O43196 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
MSH5O43196 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC8.29□□□□□ -1.08
MSH5O43196 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
MSH5O43196 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC8.28□□□□□ -1.08
MSH5O43196 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC8.28□□□□□ -1.08
MSH5O43196 SNORA27.1-201ENST00000362604 124 ntBASIC8.28□□□□□ -1.08
MSH5O43196 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC8.28□□□□□ -1.08
MSH5O43196 SNORD24-201ENST00000383884 75 ntBASIC8.28□□□□□ -1.08
MSH5O43196 SNORA67.2-201ENST00000384300 149 ntBASIC8.28□□□□□ -1.08
MSH5O43196 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC8.28□□□□□ -1.08
MSH5O43196 AC234781.4-201ENST00000419384 244 ntBASIC8.28□□□□□ -1.08
MSH5O43196 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC8.28□□□□□ -1.08
MSH5O43196 RNU6-693P-201ENST00000516134 107 ntBASIC8.28□□□□□ -1.08
MSH5O43196 RNU6-1256P-201ENST00000516539 103 ntBASIC8.28□□□□□ -1.08
MSH5O43196 AP005639.1-201ENST00000526939 192 ntBASIC8.28□□□□□ -1.08
MSH5O43196 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC8.28□□□□□ -1.08
MSH5O43196 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
MSH5O43196 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC8.28□□□□□ -1.08
MSH5O43196 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC8.28□□□□□ -1.08
MSH5O43196 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC8.28□□□□□ -1.08
MSH5O43196 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
MSH5O43196 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
MSH5O43196 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC8.28□□□□□ -1.08
MSH5O43196 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC8.27□□□□□ -1.08
MSH5O43196 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC8.27□□□□□ -1.08
MSH5O43196 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC8.27□□□□□ -1.08
MSH5O43196 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
MSH5O43196 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
MSH5O43196 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC8.27□□□□□ -1.09
MSH5O43196 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
MSH5O43196 SNORD8-201ENST00000363915 110 ntBASIC8.27□□□□□ -1.09
MSH5O43196 SNORA2.2-201ENST00000365473 135 ntBASIC8.27□□□□□ -1.09
MSH5O43196 RPL31P63-201ENST00000422565 375 ntBASIC8.27□□□□□ -1.09
MSH5O43196 YME1L1P1-201ENST00000429435 297 ntBASIC8.27□□□□□ -1.09
MSH5O43196 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC8.27□□□□□ -1.09
MSH5O43196 REG1CP-206ENST00000447469 496 ntBASIC8.27□□□□□ -1.09
MSH5O43196 AL450471.1-201ENST00000447509 127 ntBASIC8.27□□□□□ -1.09
MSH5O43196 AC245102.2-201ENST00000448956 180 ntBASIC8.27□□□□□ -1.09
MSH5O43196 SCARNA5-201ENST00000516201 276 ntBASIC8.27□□□□□ -1.09
MSH5O43196 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC8.27□□□□□ -1.09
MSH5O43196 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC8.27□□□□□ -1.09
MSH5O43196 AC096720.1-201ENST00000604441 183 ntBASIC8.27□□□□□ -1.09
MSH5O43196 HSPE1P7-201ENST00000604681 321 ntBASIC8.27□□□□□ -1.09
MSH5O43196 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC8.27□□□□□ -1.09
MSH5O43196 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
MSH5O43196 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC8.27□□□□□ -1.09
MSH5O43196 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC8.27□□□□□ -1.09
MSH5O43196 AC010168.2-201ENST00000562691 5428 ntBASIC8.27□□□□□ -1.09
MSH5O43196 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC8.26□□□□□ -1.09
MSH5O43196 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC8.26□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 117.8 ms