Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 MIR8069-1-201ENST00000616627 86 ntBASIC4.93□□□□□ -1.62
USP3Q9Y6I4 MIR8069-2-201ENST00000621412 86 ntBASIC4.93□□□□□ -1.62
USP3Q9Y6I4 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 MAPK10-304ENST00000641341 3984 ntBASIC4.93□□□□□ -1.62
USP3Q9Y6I4 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
USP3Q9Y6I4 AC125257.1-201ENST00000560400 2930 ntBASIC4.93□□□□□ -1.62
USP3Q9Y6I4 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.92□□□□□ -1.62
USP3Q9Y6I4 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
USP3Q9Y6I4 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.92□□□□□ -1.62
USP3Q9Y6I4 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
USP3Q9Y6I4 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.92□□□□□ -1.62
USP3Q9Y6I4 SALL4P2-201ENST00000423288 2910 ntBASIC4.92□□□□□ -1.62
USP3Q9Y6I4 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.92□□□□□ -1.62
USP3Q9Y6I4 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
USP3Q9Y6I4 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP3Q9Y6I4 RNU6-78P-201ENST00000362897 107 ntBASIC4.92□□□□□ -1.62
USP3Q9Y6I4 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.92□□□□□ -1.62
USP3Q9Y6I4 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP3Q9Y6I4 RNU6-843P-201ENST00000384454 104 ntBASIC4.92□□□□□ -1.62
USP3Q9Y6I4 MIR153-2-201ENST00000385225 87 ntBASIC4.92□□□□□ -1.62
USP3Q9Y6I4 RNU1-139P-201ENST00000391307 165 ntBASIC4.92□□□□□ -1.62
USP3Q9Y6I4 RNA5SP397-201ENST00000391323 118 ntBASIC4.92□□□□□ -1.62
USP3Q9Y6I4 RPS16P5-201ENST00000406501 404 ntBASIC4.92□□□□□ -1.62
USP3Q9Y6I4 CYP4F29P-201ENST00000420685 446 ntBASIC4.92□□□□□ -1.62
USP3Q9Y6I4 RPL27AP8-201ENST00000424277 446 ntBASIC4.92□□□□□ -1.62
USP3Q9Y6I4 AC098614.2-201ENST00000426040 255 ntBASIC4.92□□□□□ -1.62
USP3Q9Y6I4 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.92□□□□□ -1.62
USP3Q9Y6I4 RPS15AP7-201ENST00000439294 405 ntBASIC4.92□□□□□ -1.62
USP3Q9Y6I4 AC007395.1-201ENST00000451333 677 ntBASIC4.92□□□□□ -1.62
USP3Q9Y6I4 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.92□□□□□ -1.62
USP3Q9Y6I4 AC008897.1-201ENST00000494006 347 ntBASIC4.92□□□□□ -1.62
USP3Q9Y6I4 TRAPPC2P7-201ENST00000509650 231 ntBASIC4.92□□□□□ -1.62
USP3Q9Y6I4 RNU6-1256P-201ENST00000516539 103 ntBASIC4.92□□□□□ -1.62
USP3Q9Y6I4 RNU6-572P-201ENST00000516724 80 ntBASIC4.92□□□□□ -1.62
USP3Q9Y6I4 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.92□□□□□ -1.62
USP3Q9Y6I4 AP004371.1-201ENST00000525240 214 ntBASIC4.92□□□□□ -1.62
USP3Q9Y6I4 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC4.92□□□□□ -1.62
USP3Q9Y6I4 MIR4282-201ENST00000583613 67 ntBASIC4.92□□□□□ -1.62
USP3Q9Y6I4 uc_338.18-201ENST00000615451 175 ntBASIC4.92□□□□□ -1.62
USP3Q9Y6I4 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.92□□□□□ -1.62
USP3Q9Y6I4 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.92□□□□□ -1.62
USP3Q9Y6I4 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP3Q9Y6I4 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP3Q9Y6I4 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP3Q9Y6I4 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.91□□□□□ -1.62
USP3Q9Y6I4 AL359854.1-201ENST00000614203 1594 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 SMG1P4-204ENST00000523028 4131 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
USP3Q9Y6I4 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
USP3Q9Y6I4 SNORA25.1-201ENST00000362326 128 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 Y_RNA.82-201ENST00000363000 102 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 Y_RNA.92-201ENST00000363043 102 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 SNORD113.2-201ENST00000364166 89 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 Y_RNA.235-201ENST00000364412 102 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 Y_RNA.240-201ENST00000364469 95 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 RNA5SP505-201ENST00000364748 108 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 Y_RNA.304-201ENST00000365011 112 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 Y_RNA.306-201ENST00000365015 102 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 Y_RNA.312-201ENST00000365089 102 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 Y_RNA.322-201ENST00000365151 102 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 RNU6-493P-201ENST00000391321 108 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 RNU6ATAC15P-201ENST00000408279 121 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 Y_RNA.590-201ENST00000410140 107 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 RNU2-61P-201ENST00000411069 191 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 RAB9AP3-201ENST00000412737 573 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC4.91□□□□□ -1.62
USP3Q9Y6I4 RAB9AP1-201ENST00000449393 573 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 RPL23AP81-201ENST00000455252 467 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 Y_RNA.650-201ENST00000459002 102 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 AC091021.1-201ENST00000468051 388 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 RPL31P13-201ENST00000484151 370 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 Y_RNA.777-201ENST00000516982 102 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 Y_RNA.771-201ENST00000598668 102 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 RPL23AP88-201ENST00000605759 454 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 AP002826.1-201ENST00000608835 315 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 MIR6820-201ENST00000611508 62 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 AC011476.5-201ENST00000615594 130 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 Y_RNA.789-201ENST00000622480 102 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 AC006065.5-201ENST00000623427 349 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 AC090617.7-201ENST00000623952 126 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
USP3Q9Y6I4 AC009541.1-201ENST00000438279 2662 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
USP3Q9Y6I4 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
USP3Q9Y6I4 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.91□□□□□ -1.62
USP3Q9Y6I4 AL445487.1-201ENST00000415694 1580 ntBASIC4.91□□□□□ -1.62
USP3Q9Y6I4 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
USP3Q9Y6I4 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.62
USP3Q9Y6I4 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.9□□□□□ -1.62
USP3Q9Y6I4 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC4.9□□□□□ -1.62
USP3Q9Y6I4 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
USP3Q9Y6I4 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
USP3Q9Y6I4 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.9□□□□□ -1.62
USP3Q9Y6I4 RNU1-83P-201ENST00000363426 164 ntBASIC4.9□□□□□ -1.63
USP3Q9Y6I4 RNU6-105P-201ENST00000363909 104 ntBASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms