Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AL158032.1-201ENST00000605401 106 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 MIR15A-201ENST00000607334 83 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 U2.21-201ENST00000637295 81 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 MTND5P26-201ENST00000426018 1752 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 MTND5P17-201ENST00000418405 1603 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 AC103710.2-202ENST00000641454 2853 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 MIR454-201ENST00000390180 115 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 SNORA48.7-201ENST00000391302 135 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 AL591704.1-201ENST00000432574 275 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 AL451074.3-201ENST00000437709 472 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 NANOGNBP1-201ENST00000448444 480 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 RPL26P9-201ENST00000457466 433 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 RPL21P8-201ENST00000465083 535 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 AC126182.1-201ENST00000478134 357 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 AC011825.1-201ENST00000484967 388 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 HMGB1P29-201ENST00000505659 499 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 AC109927.2-201ENST00000506416 303 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 OR4R1P-201ENST00000529879 463 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 DNAJC8P1-201ENST00000554535 372 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 H3F3AP1-201ENST00000559984 334 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 HMGN2P15-201ENST00000585707 270 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 AL136363.2-201ENST00000604173 851 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 AL022154.1-201ENST00000604698 785 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 AC004492.1-201ENST00000607036 742 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 AC004852.3-201ENST00000614131 326 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 AL157786.1-207ENST00000627771 695 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 AC108206.1-201ENST00000570186 4159 ntBASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
LIMA1Q9UHB6 MTND5P7-201ENST00000413558 1798 ntBASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 AC091564.4-201ENST00000533934 2194 ntBASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 RNU6-778P-201ENST00000363269 103 ntBASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 SNORA62.1-201ENST00000364287 154 ntBASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 RNU6-1103P-201ENST00000384150 107 ntBASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 MIR512-1-201ENST00000384913 84 ntBASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 MIR301A-201ENST00000385261 86 ntBASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 Y_RNA.599-201ENST00000410489 109 ntBASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 YME1L1P1-201ENST00000429435 297 ntBASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 CYCSP32-201ENST00000440548 321 ntBASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 PRSS3P4-201ENST00000453323 162 ntBASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 RPS29P20-201ENST00000489592 171 ntBASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 AC139453.3-201ENST00000493276 369 ntBASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 AC114786.4-201ENST00000508771 728 ntBASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 RNU6-1315P-201ENST00000517187 99 ntBASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 OR5AL2P-201ENST00000532185 920 ntBASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 AC010546.1-201ENST00000569391 485 ntBASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 AC012314.7-201ENST00000619693 93 ntBASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.17□□□□□ -1.9
LIMA1Q9UHB6 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 Y_RNA.41-201ENST00000362646 102 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 Y_RNA.159-201ENST00000363674 87 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 RN7SKP226-201ENST00000364912 300 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 SNORA9.2-201ENST00000365361 133 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 SNORA4.3-201ENST00000365564 137 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 CISD1P1-201ENST00000393907 327 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 RNU2-9P-201ENST00000410194 145 ntBASIC3.16□□□□□ -1.9
LIMA1Q9UHB6 RNU6-387P-201ENST00000411331 105 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms