Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL353997.1-201ENST00000432936 108 ntBASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 RNU7-187P-201ENST00000458985 68 ntBASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 RPL23AP55-201ENST00000498163 452 ntBASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 AC092436.3-201ENST00000511788 257 ntBASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 CYCSP27-201ENST00000527643 293 ntBASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 AL133271.1-201ENST00000538229 291 ntBASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 MIR4293-201ENST00000584305 78 ntBASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 VN1R91P-201ENST00000594377 169 ntBASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 AC008162.1-201ENST00000604718 254 ntBASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 AL670379.4-201ENST00000605279 254 ntBASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 MIR335-201ENST00000362173 94 ntBASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 Y_RNA.81-201ENST00000362997 102 ntBASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 Y_RNA.84-201ENST00000363011 104 ntBASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 Y_RNA.237-201ENST00000364439 102 ntBASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 RNU6-740P-201ENST00000364734 105 ntBASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 RNU6-434P-201ENST00000384376 107 ntBASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 MIR517A-201ENST00000385001 87 ntBASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 AL603910.2-201ENST00000407268 136 ntBASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 RPL37P18-201ENST00000411602 243 ntBASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 ELOCP19-201ENST00000411919 318 ntBASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 AC245028.1-201ENST00000423259 256 ntBASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 AC087650.1-201ENST00000431445 468 ntBASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 AL645568.3-201ENST00000433683 316 ntBASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 AC005094.1-201ENST00000440420 368 ntBASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 AC084198.1-201ENST00000477747 402 ntBASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 RPL23AP84-201ENST00000571193 464 ntBASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 AC073410.2-201ENST00000603240 332 ntBASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 AL590099.1-201ENST00000615276 138 ntBASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC39Q9UFE4 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 EXOC5P1-201ENST00000510543 1969 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 Y_RNA.151-201ENST00000363566 112 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 Y_RNA.269-201ENST00000364685 89 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 RNU6-715P-201ENST00000365204 103 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 Y_RNA.352-201ENST00000365439 102 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 MIR585-201ENST00000384887 94 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 MIR153-1-201ENST00000384914 90 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 UBE2D3P2-201ENST00000424409 445 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 AC068287.1-201ENST00000430283 295 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 RPL23AP31-201ENST00000456160 467 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 RPS29P33-201ENST00000456717 146 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 RPL36AP13-201ENST00000457490 317 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 Y_RNA.644-201ENST00000459006 113 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 RNU7-169P-201ENST00000459456 61 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 RN7SL738P-201ENST00000470264 297 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 RPL21P103-201ENST00000479921 488 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 AC098869.1-201ENST00000481627 292 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 AP001086.1-201ENST00000494882 321 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 AC104057.1-201ENST00000515547 497 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 Y_RNA.674-201ENST00000516362 113 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 AC109329.1-201ENST00000518744 317 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 AL390123.1-201ENST00000603216 237 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 AC007566.2-201ENST00000603642 413 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 AL355877.2-201ENST00000603670 358 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 AC004832.4-201ENST00000608952 331 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 AL359547.2-201ENST00000615810 418 ntBASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC39Q9UFE4 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms