Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 AC074250.1-201ENST00000511117 192 ntBASIC3.19□□□□□ -1.9
SMARCAL1Q9NZC9 RNU6-840P-201ENST00000517275 65 ntBASIC3.19□□□□□ -1.9
SMARCAL1Q9NZC9 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.19□□□□□ -1.9
SMARCAL1Q9NZC9 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC3.19□□□□□ -1.9
SMARCAL1Q9NZC9 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.19□□□□□ -1.9
SMARCAL1Q9NZC9 AC005730.3-201ENST00000583067 366 ntBASIC3.19□□□□□ -1.9
SMARCAL1Q9NZC9 SNORD84-203ENST00000584275 78 ntBASIC3.19□□□□□ -1.9
SMARCAL1Q9NZC9 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.19□□□□□ -1.9
SMARCAL1Q9NZC9 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.19□□□□□ -1.9
SMARCAL1Q9NZC9 AC069200.1-201ENST00000609511 323 ntBASIC3.19□□□□□ -1.9
SMARCAL1Q9NZC9 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC3.19□□□□□ -1.9
SMARCAL1Q9NZC9 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
SMARCAL1Q9NZC9 AC010338.1-201ENST00000621823 717 ntBASIC3.19□□□□□ -1.9
SMARCAL1Q9NZC9 FRG1KP-201ENST00000623592 341 ntBASIC3.19□□□□□ -1.9
SMARCAL1Q9NZC9 AC009033.1-201ENST00000624279 431 ntBASIC3.19□□□□□ -1.9
SMARCAL1Q9NZC9 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SMARCAL1Q9NZC9 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 NACAP2-201ENST00000318548 624 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 RNU6-1029P-201ENST00000384109 107 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 SAR1AP2-201ENST00000392696 594 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 NDUFS5P1-201ENST00000405668 289 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 RPL7P46-201ENST00000425129 740 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 RPL21P40-201ENST00000428586 483 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 AC005326.1-201ENST00000429197 123 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 USP12PX-201ENST00000432383 1057 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 AL353705.1-201ENST00000433468 480 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 Z75741.1-201ENST00000446793 314 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 RNU7-182P-201ENST00000459009 62 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 RN7SL432P-201ENST00000484057 298 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 RPL32P34-201ENST00000486380 400 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 EIF4EP3-201ENST00000498782 656 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 VN1R104P-201ENST00000505115 1009 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 AC092436.1-201ENST00000506450 503 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 AC018710.1-201ENST00000506509 158 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 AC025465.4-201ENST00000513422 638 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 RNA5SP76-201ENST00000516277 87 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 SNORA20.3-201ENST00000516880 132 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 AF235103.2-201ENST00000525753 346 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 OR5B19P-201ENST00000531766 928 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 OR5BN1P-201ENST00000532955 829 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 SNRPGP16-201ENST00000533275 226 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 AC093012.1-202ENST00000549403 582 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 UBL5P2-201ENST00000583788 219 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 NRBF2P5-201ENST00000603087 788 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 DPPA3P3-201ENST00000603842 430 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 AC010133.1-201ENST00000615809 842 ntBASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
SMARCAL1Q9NZC9 Y_RNA.70-201ENST00000362886 110 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 RNU6-179P-201ENST00000363350 107 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 Y_RNA.160-201ENST00000363677 92 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 RNA5SP267-201ENST00000364893 126 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 RNU6-61P-201ENST00000365528 109 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 RNU6-946P-201ENST00000383878 107 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 SNORA36C-201ENST00000384289 132 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 U3.19-201ENST00000390893 196 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 AL356776.1-201ENST00000406574 447 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 SNRPEP10-201ENST00000420249 274 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 AL451062.2-201ENST00000427515 271 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 AC008850.1-201ENST00000427546 362 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 AL118520.1-201ENST00000450770 291 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 ELOCP23-201ENST00000452014 332 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 GMFBP1-201ENST00000467831 427 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 RN7SL601P-201ENST00000471221 293 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 AC108860.1-201ENST00000484521 383 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 GMPSP1-201ENST00000514075 579 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 AC105417.1-201ENST00000514691 285 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 RNU6-507P-201ENST00000516045 100 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 RN7SKP219-201ENST00000516825 296 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 ERHP1-201ENST00000523006 310 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 SUB1P1-201ENST00000524415 382 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 AC010525.2-201ENST00000590920 195 ntBASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.17□□□□□ -1.9
SMARCAL1Q9NZC9 AC024220.1-201ENST00000603675 484 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms