Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AL157770.1-201ENST00000623049 439 ntBASIC1.98□□□□□ -2.09
USP42Q9H9J4 MIR3199-2-201ENST00000636243 86 ntBASIC1.98□□□□□ -2.09
USP42Q9H9J4 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
USP42Q9H9J4 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
USP42Q9H9J4 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
USP42Q9H9J4 RNU6-637P-201ENST00000384050 107 ntBASIC1.97□□□□□ -2.09
USP42Q9H9J4 SNORD65.1-201ENST00000390889 71 ntBASIC1.97□□□□□ -2.09
USP42Q9H9J4 CIR1P3-201ENST00000405137 479 ntBASIC1.97□□□□□ -2.09
USP42Q9H9J4 RNU2-40P-201ENST00000410833 196 ntBASIC1.97□□□□□ -2.09
USP42Q9H9J4 BTF3L4P3-201ENST00000418879 476 ntBASIC1.97□□□□□ -2.09
USP42Q9H9J4 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC1.97□□□□□ -2.09
USP42Q9H9J4 MTCO1P3-201ENST00000429327 192 ntBASIC1.97□□□□□ -2.09
USP42Q9H9J4 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC1.97□□□□□ -2.09
USP42Q9H9J4 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.97□□□□□ -2.09
USP42Q9H9J4 AC026414.1-201ENST00000504046 698 ntBASIC1.97□□□□□ -2.09
USP42Q9H9J4 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC1.97□□□□□ -2.09
USP42Q9H9J4 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC1.97□□□□□ -2.09
USP42Q9H9J4 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC1.97□□□□□ -2.09
USP42Q9H9J4 SNORA31.6-201ENST00000516241 130 ntBASIC1.97□□□□□ -2.09
USP42Q9H9J4 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC1.97□□□□□ -2.09
USP42Q9H9J4 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.97□□□□□ -2.09
USP42Q9H9J4 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC1.97□□□□□ -2.09
USP42Q9H9J4 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.97□□□□□ -2.09
USP42Q9H9J4 AC007151.1-201ENST00000572774 483 ntBASIC1.97□□□□□ -2.09
USP42Q9H9J4 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC1.97□□□□□ -2.09
USP42Q9H9J4 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC1.97□□□□□ -2.09
USP42Q9H9J4 AL118556.2-201ENST00000614375 824 ntBASIC1.97□□□□□ -2.09
USP42Q9H9J4 AL354696.1-201ENST00000614652 497 ntBASIC1.97□□□□□ -2.09
USP42Q9H9J4 AP002791.1-201ENST00000623291 381 ntBASIC1.97□□□□□ -2.09
USP42Q9H9J4 AC025048.6-202ENST00000627667 438 ntBASIC1.97□□□□□ -2.09
USP42Q9H9J4 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.97□□□□□ -2.09
USP42Q9H9J4 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
USP42Q9H9J4 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC1.96□□□□□ -2.1
USP42Q9H9J4 Y_RNA.466-201ENST00000384294 113 ntBASIC1.96□□□□□ -2.1
USP42Q9H9J4 MIR517C-201ENST00000385103 95 ntBASIC1.96□□□□□ -2.1
USP42Q9H9J4 RN7SKP158-201ENST00000410453 326 ntBASIC1.96□□□□□ -2.1
USP42Q9H9J4 AL030996.1-201ENST00000411430 235 ntBASIC1.96□□□□□ -2.1
USP42Q9H9J4 AC096649.2-201ENST00000416186 393 ntBASIC1.96□□□□□ -2.1
USP42Q9H9J4 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC1.96□□□□□ -2.1
USP42Q9H9J4 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC1.96□□□□□ -2.1
USP42Q9H9J4 BX119904.4-201ENST00000424402 301 ntBASIC1.96□□□□□ -2.1
USP42Q9H9J4 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.96□□□□□ -2.1
USP42Q9H9J4 RGS5-217ENST00000451759 835 ntTSL 3 BASIC1.96□□□□□ -2.1
USP42Q9H9J4 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC1.96□□□□□ -2.1
USP42Q9H9J4 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.96□□□□□ -2.1
USP42Q9H9J4 AC080013.2-201ENST00000460866 323 ntBASIC1.96□□□□□ -2.1
USP42Q9H9J4 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC1.96□□□□□ -2.1
USP42Q9H9J4 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC1.96□□□□□ -2.1
USP42Q9H9J4 RPS27P21-201ENST00000486977 252 ntBASIC1.96□□□□□ -2.1
USP42Q9H9J4 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC1.96□□□□□ -2.1
USP42Q9H9J4 MIR514B-201ENST00000516774 80 ntBASIC1.96□□□□□ -2.1
USP42Q9H9J4 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC1.96□□□□□ -2.1
USP42Q9H9J4 MIR5708-201ENST00000579723 85 ntBASIC1.96□□□□□ -2.1
USP42Q9H9J4 SNORA4-201ENST00000584302 138 ntBASIC1.96□□□□□ -2.1
USP42Q9H9J4 AC012493.3-201ENST00000604494 112 ntBASIC1.96□□□□□ -2.1
USP42Q9H9J4 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.96□□□□□ -2.1
USP42Q9H9J4 AC098657.3-201ENST00000620434 263 ntBASIC1.96□□□□□ -2.1
USP42Q9H9J4 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC1.96□□□□□ -2.1
USP42Q9H9J4 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC1.96□□□□□ -2.1
USP42Q9H9J4 Y_RNA.234-201ENST00000364409 97 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 SNORA16B-201ENST00000364674 135 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 RNU6-207P-201ENST00000384137 107 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 USP9YP19-201ENST00000412165 485 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 MTCYBP38-201ENST00000417160 1123 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 USP9YP13-201ENST00000417797 480 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC1.95□□□□□ -2.1
USP42Q9H9J4 AL513185.2-201ENST00000425543 193 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 USP9YP22-201ENST00000438971 294 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.95□□□□□ -2.1
USP42Q9H9J4 BTBD7P2-201ENST00000441962 620 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC1.95□□□□□ -2.1
USP42Q9H9J4 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
USP42Q9H9J4 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC1.95□□□□□ -2.1
USP42Q9H9J4 ATG12P2-201ENST00000456830 416 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 RNU1-123P-201ENST00000458950 160 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 AC068781.1-201ENST00000488231 618 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC1.95□□□□□ -2.1
USP42Q9H9J4 AC114981.1-201ENST00000503897 678 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 RNA5SP290-201ENST00000517133 127 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 SNORA31.24-201ENST00000517232 57 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 NRON-201ENST00000517270 370 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 NDUFA5P6-201ENST00000542110 379 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 AC024619.4-201ENST00000580924 316 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 AC098848.2-201ENST00000588023 330 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 AC024257.5-201ENST00000612739 531 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 AC010133.1-201ENST00000615809 842 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 AC120349.2-201ENST00000625002 298 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
USP42Q9H9J4 ZNF209P-201ENST00000593450 2304 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 AL138713.1-201ENST00000624026 2130 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 MTND5P35-201ENST00000557537 1720 ntBASIC1.95□□□□□ -2.1
USP42Q9H9J4 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC1.95□□□□□ -2.1
USP42Q9H9J4 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.95□□□□□ -2.1
USP42Q9H9J4 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC1.94□□□□□ -2.1
USP42Q9H9J4 BPY2DP-201ENST00000422208 265 ntBASIC1.94□□□□□ -2.1
USP42Q9H9J4 MTND4P15-201ENST00000437913 1033 ntBASIC1.94□□□□□ -2.1
USP42Q9H9J4 AC004383.1-201ENST00000438135 289 ntBASIC1.94□□□□□ -2.1
USP42Q9H9J4 AC244505.3-201ENST00000454598 187 ntBASIC1.94□□□□□ -2.1
USP42Q9H9J4 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.94□□□□□ -2.1
USP42Q9H9J4 AC022493.1-201ENST00000492984 337 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms