Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC007151.1-201ENST00000572774 483 ntBASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 AC005261.5-201ENST00000596280 355 ntBASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 AC067747.1-201ENST00000608026 250 ntBASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 AP003485.2-201ENST00000623636 610 ntBASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 AC010329.5-201ENST00000623497 2174 ntBASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 AC005336.3-201ENST00000623833 2679 ntBASIC2.61□□□□□ -1.99
CCDC40Q4G0X9 Z82209.1-201ENST00000422141 2135 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 AL139276.1-201ENST00000311910 1001 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 SNORA38-201ENST00000363946 132 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 RNU6-658P-201ENST00000384606 106 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 RNU2-36P-201ENST00000410361 191 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 RNU2-62P-201ENST00000410868 191 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 AC118469.1-201ENST00000442943 488 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 HMGN2P10-201ENST00000448085 265 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 MTATP6P7-201ENST00000453315 681 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 RPS3P1-201ENST00000456781 192 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 AL121769.1-201ENST00000469473 401 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 AC004924.1-201ENST00000480160 781 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 SNORA31.6-201ENST00000516241 130 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 AP003467.2-201ENST00000520175 319 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 AC022616.6-201ENST00000520479 119 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 AC107934.1-201ENST00000522215 217 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 AC021269.2-201ENST00000532318 330 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 AC135628.1-201ENST00000568867 534 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 MYL12BP1-201ENST00000569826 507 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 AL391813.1-201ENST00000603098 260 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 AP001981.2-201ENST00000603241 418 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 AL356266.1-201ENST00000623311 483 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 MIR1291-201ENST00000627649 87 ntBASIC2.6□□□□□ -1.99
CCDC40Q4G0X9 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 NACAP2-201ENST00000318548 624 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 RNU6-511P-201ENST00000363496 107 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 RNU6-288P-201ENST00000363690 104 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 RNU6-188P-201ENST00000364207 107 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 RNY4P16-201ENST00000364768 94 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 XKRYP1-201ENST00000423438 492 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AL592045.1-201ENST00000429867 352 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 XKRYP2-201ENST00000432915 492 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AL008629.1-201ENST00000438615 184 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 RPL22P17-201ENST00000438729 315 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AC128713.1-201ENST00000471495 306 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 RPL7P20-201ENST00000520308 745 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 MTND4LP18-201ENST00000526864 291 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AC087241.2-201ENST00000535801 324 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AC006199.1-201ENST00000548728 219 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 ZNF519P3-201ENST00000557158 1032 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AC234778.2-201ENST00000566241 354 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AC091489.2-201ENST00000566263 604 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AC002400.1-201ENST00000569310 726 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AC073544.2-201ENST00000601155 540 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AL670379.6-201ENST00000603753 252 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AL670379.11-201ENST00000604059 253 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AC008162.1-201ENST00000604718 254 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AL670379.1-201ENST00000604752 252 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AL670379.5-201ENST00000605253 252 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AL670379.12-201ENST00000605291 253 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AL670379.8-201ENST00000605353 252 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AL670379.7-201ENST00000605823 252 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AC103710.2-201ENST00000609912 942 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 AC010149.2-201ENST00000637608 315 ntBASIC2.59□□□□□ -1.99
CCDC40Q4G0X9 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.59□□□□□ -2
CCDC40Q4G0X9 AC104454.1-201ENST00000421341 1401 ntBASIC2.59□□□□□ -2
CCDC40Q4G0X9 AC092104.1-201ENST00000497346 1441 ntBASIC2.59□□□□□ -2
CCDC40Q4G0X9 ADAM3A-203ENST00000461344 2157 ntBASIC2.59□□□□□ -2
CCDC40Q4G0X9 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.58□□□□□ -2
CCDC40Q4G0X9 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
CCDC40Q4G0X9 RNU6-500P-201ENST00000362349 107 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 RNU6-1083P-201ENST00000384022 107 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 MIR634-201ENST00000385208 97 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 RNU6-817P-201ENST00000391083 104 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.58□□□□□ -2
CCDC40Q4G0X9 HIGD1AP15-201ENST00000416198 280 ntBASIC2.58□□□□□ -2
CCDC40Q4G0X9 USP9YP27-201ENST00000418455 438 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms