Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AL158032.1-201ENST00000605401 106 ntBASIC3.23□□□□□ -1.89
USP41Q3LFD5 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.23□□□□□ -1.89
USP41Q3LFD5 AL365204.3-201ENST00000612448 685 ntBASIC3.23□□□□□ -1.89
USP41Q3LFD5 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.23□□□□□ -1.89
USP41Q3LFD5 AC093648.1-201ENST00000623546 606 ntBASIC3.23□□□□□ -1.89
USP41Q3LFD5 AC068137.3-201ENST00000639191 341 ntBASIC3.23□□□□□ -1.89
USP41Q3LFD5 AC073869.6-201ENST00000640656 341 ntBASIC3.23□□□□□ -1.89
USP41Q3LFD5 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.23□□□□□ -1.89
USP41Q3LFD5 MTND4P5-201ENST00000435821 1374 ntBASIC3.23□□□□□ -1.89
USP41Q3LFD5 AL137003.2-201ENST00000606924 2538 ntBASIC3.23□□□□□ -1.89
USP41Q3LFD5 UBE2L2-201ENST00000254302 429 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 RNU6-1120P-201ENST00000362988 108 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 SNORA62.1-201ENST00000364287 154 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 RPS4XP3-201ENST00000398541 413 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 CALM2P3-201ENST00000400429 449 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 AL139397.2-201ENST00000404529 772 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 AL139132.1-201ENST00000431587 344 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 AL512844.2-201ENST00000433990 593 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 RPL36AP6-201ENST00000435770 321 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.22□□□□□ -1.89
USP41Q3LFD5 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.22□□□□□ -1.89
USP41Q3LFD5 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC3.22□□□□□ -1.89
USP41Q3LFD5 RN7SL75P-201ENST00000461926 281 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 AC117440.1-201ENST00000474107 571 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 RPL23AP94-201ENST00000512518 302 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 RNA5SP385-201ENST00000515947 110 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 RNU6-677P-201ENST00000516914 101 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 RNA5SP471-201ENST00000516971 106 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC3.22□□□□□ -1.89
USP41Q3LFD5 OR5G4P-201ENST00000525251 760 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 ATP5F1P5-201ENST00000526403 760 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 OR5AL2P-201ENST00000532185 920 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.22□□□□□ -1.89
USP41Q3LFD5 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.22□□□□□ -1.89
USP41Q3LFD5 AL359212.1-201ENST00000556608 614 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC3.22□□□□□ -1.89
USP41Q3LFD5 AC034105.3-201ENST00000565294 442 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 AC024619.4-201ENST00000580924 316 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.22□□□□□ -1.89
USP41Q3LFD5 AC002076.2-201ENST00000617362 122 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 AL359880.1-201ENST00000621879 266 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 AC005858.4-201ENST00000623191 700 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 AC025034.2-201ENST00000623264 286 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 AC027309.3-201ENST00000623419 351 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 AC139792.3-201ENST00000623525 224 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 CR381653.2-201ENST00000624041 768 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 AL157786.1-207ENST00000627771 695 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.22□□□□□ -1.89
USP41Q3LFD5 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
USP41Q3LFD5 MAPK10-362ENST00000641864 4484 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
USP41Q3LFD5 ZNF680P1-201ENST00000436625 1469 ntBASIC3.22□□□□□ -1.89
USP41Q3LFD5 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
USP41Q3LFD5 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
USP41Q3LFD5 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
USP41Q3LFD5 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
USP41Q3LFD5 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
USP41Q3LFD5 Y_RNA.6-201ENST00000362350 114 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 RNU6-1167P-201ENST00000363227 94 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 RNU6-512P-201ENST00000364438 103 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 Y_RNA.372-201ENST00000365599 102 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 Y_RNA.381-201ENST00000365666 102 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
USP41Q3LFD5 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
USP41Q3LFD5 RNU6-851P-201ENST00000384565 107 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 RNU6-817P-201ENST00000391083 104 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 RNU2-33P-201ENST00000410344 192 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.21□□□□□ -1.9
USP41Q3LFD5 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC3.21□□□□□ -1.9
USP41Q3LFD5 AC092809.3-201ENST00000415453 231 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 AL353193.1-201ENST00000421444 268 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.21□□□□□ -1.9
USP41Q3LFD5 C8orf59P1-201ENST00000429930 303 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.21□□□□□ -1.9
USP41Q3LFD5 AC244505.4-201ENST00000434905 287 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 SSXP5-201ENST00000443473 287 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC3.21□□□□□ -1.9
USP41Q3LFD5 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.21□□□□□ -1.9
USP41Q3LFD5 AC087588.1-201ENST00000462203 316 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 MRPS17P3-201ENST00000465453 385 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 RPS29P26-201ENST00000477483 171 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.21□□□□□ -1.9
USP41Q3LFD5 AL160314.1-201ENST00000490836 438 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.21□□□□□ -1.9
USP41Q3LFD5 Y_RNA.689-201ENST00000516589 107 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 AP001893.2-201ENST00000526949 202 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC3.21□□□□□ -1.9
USP41Q3LFD5 AL163153.1-201ENST00000554223 283 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 TRAV28-201ENST00000557548 323 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC3.21□□□□□ -1.9
USP41Q3LFD5 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
USP41Q3LFD5 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
USP41Q3LFD5 AC130324.3-201ENST00000614165 542 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 AC034102.8-201ENST00000615146 484 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 AC068792.1-201ENST00000621354 417 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.21□□□□□ -1.9
USP41Q3LFD5 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.21□□□□□ -1.9
USP41Q3LFD5 MTND1P37-201ENST00000636562 264 ntBASIC3.21□□□□□ -1.9
USP41Q3LFD5 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.21□□□□□ -1.9
USP41Q3LFD5 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 171.6 ms