Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC4.48□□□□□ -1.69
SF3A1Q15459 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.48□□□□□ -1.69
SF3A1Q15459 HMGB1P9-201ENST00000429856 646 ntBASIC4.48□□□□□ -1.69
SF3A1Q15459 NDUFB1P2-201ENST00000449477 176 ntBASIC4.48□□□□□ -1.69
SF3A1Q15459 AC117503.1-201ENST00000472241 394 ntBASIC4.48□□□□□ -1.69
SF3A1Q15459 RPS27AP10-201ENST00000496103 208 ntBASIC4.48□□□□□ -1.69
SF3A1Q15459 HMGN1P12-201ENST00000499125 195 ntBASIC4.48□□□□□ -1.69
SF3A1Q15459 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC4.48□□□□□ -1.69
SF3A1Q15459 RNU6-703P-201ENST00000516946 107 ntBASIC4.48□□□□□ -1.69
SF3A1Q15459 RN7SKP256-201ENST00000517201 314 ntBASIC4.48□□□□□ -1.69
SF3A1Q15459 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC4.48□□□□□ -1.69
SF3A1Q15459 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.48□□□□□ -1.69
SF3A1Q15459 HMGN2P15-201ENST00000585707 270 ntBASIC4.48□□□□□ -1.69
SF3A1Q15459 UBE2V2P2-201ENST00000587677 504 ntBASIC4.48□□□□□ -1.69
SF3A1Q15459 HMGB1P50-201ENST00000605814 607 ntBASIC4.48□□□□□ -1.69
SF3A1Q15459 MIR6867-201ENST00000610636 67 ntBASIC4.48□□□□□ -1.69
SF3A1Q15459 AC005858.4-201ENST00000623191 700 ntBASIC4.48□□□□□ -1.69
SF3A1Q15459 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.48□□□□□ -1.69
SF3A1Q15459 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
SF3A1Q15459 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SF3A1Q15459 RLIMP1-201ENST00000339626 1680 ntBASIC4.48□□□□□ -1.69
SF3A1Q15459 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.47□□□□□ -1.69
SF3A1Q15459 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
SF3A1Q15459 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.47□□□□□ -1.69
SF3A1Q15459 AL353746.1-201ENST00000566293 6881 ntBASIC4.47□□□□□ -1.69
SF3A1Q15459 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
SF3A1Q15459 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SF3A1Q15459 RNU6-845P-201ENST00000362578 103 ntBASIC4.47□□□□□ -1.69
SF3A1Q15459 RNA5SP322-201ENST00000363617 119 ntBASIC4.47□□□□□ -1.69
SF3A1Q15459 RNU6-384P-201ENST00000364900 104 ntBASIC4.47□□□□□ -1.69
SF3A1Q15459 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC4.47□□□□□ -1.69
SF3A1Q15459 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.47□□□□□ -1.69
SF3A1Q15459 AL691449.1-201ENST00000426570 421 ntBASIC4.47□□□□□ -1.69
SF3A1Q15459 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC4.47□□□□□ -1.69
SF3A1Q15459 IFNA20P-201ENST00000436840 528 ntBASIC4.47□□□□□ -1.69
SF3A1Q15459 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.47□□□□□ -1.69
SF3A1Q15459 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC4.47□□□□□ -1.69
SF3A1Q15459 RPL21P129-201ENST00000491732 478 ntBASIC4.47□□□□□ -1.69
SF3A1Q15459 RNU6-507P-201ENST00000516045 100 ntBASIC4.47□□□□□ -1.69
SF3A1Q15459 AL163153.1-201ENST00000554223 283 ntBASIC4.47□□□□□ -1.69
SF3A1Q15459 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.47□□□□□ -1.69
SF3A1Q15459 AC012468.1-201ENST00000604888 430 ntBASIC4.47□□□□□ -1.69
SF3A1Q15459 AC005344.1-201ENST00000613391 459 ntBASIC4.47□□□□□ -1.69
SF3A1Q15459 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC4.47□□□□□ -1.69
SF3A1Q15459 XIST_intron.1-201ENST00000619444 68 ntBASIC4.47□□□□□ -1.69
SF3A1Q15459 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
SF3A1Q15459 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
SF3A1Q15459 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
SF3A1Q15459 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
SF3A1Q15459 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
SF3A1Q15459 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.69
SF3A1Q15459 Y_RNA.70-201ENST00000362886 110 ntBASIC4.46□□□□□ -1.7
SF3A1Q15459 RNU6-831P-201ENST00000384548 107 ntBASIC4.46□□□□□ -1.7
SF3A1Q15459 MIR134-201ENST00000385258 73 ntBASIC4.46□□□□□ -1.7
SF3A1Q15459 HLFP1-201ENST00000402375 499 ntBASIC4.46□□□□□ -1.7
SF3A1Q15459 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC4.46□□□□□ -1.7
SF3A1Q15459 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.46□□□□□ -1.7
SF3A1Q15459 MTND4LP16-201ENST00000440828 295 ntBASIC4.46□□□□□ -1.7
SF3A1Q15459 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC4.46□□□□□ -1.7
SF3A1Q15459 BTF3P15-201ENST00000455606 336 ntBASIC4.46□□□□□ -1.7
SF3A1Q15459 PPP1R2P5-201ENST00000457256 603 ntBASIC4.46□□□□□ -1.7
SF3A1Q15459 RNU7-66P-201ENST00000459469 62 ntBASIC4.46□□□□□ -1.7
SF3A1Q15459 RPL21P11-201ENST00000461458 483 ntBASIC4.46□□□□□ -1.7
SF3A1Q15459 BTF3L4P4-201ENST00000506381 449 ntBASIC4.46□□□□□ -1.7
SF3A1Q15459 AC046134.1-201ENST00000514454 666 ntBASIC4.46□□□□□ -1.7
SF3A1Q15459 SNORA25.17-201ENST00000517184 124 ntBASIC4.46□□□□□ -1.7
SF3A1Q15459 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC4.46□□□□□ -1.7
SF3A1Q15459 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC4.46□□□□□ -1.7
SF3A1Q15459 MIR5692C1-201ENST00000585309 91 ntBASIC4.46□□□□□ -1.7
SF3A1Q15459 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC4.46□□□□□ -1.7
SF3A1Q15459 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.46□□□□□ -1.7
SF3A1Q15459 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC4.46□□□□□ -1.7
SF3A1Q15459 BRDTP1-201ENST00000605735 677 ntBASIC4.46□□□□□ -1.7
SF3A1Q15459 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.46□□□□□ -1.7
SF3A1Q15459 RNU4-89P-201ENST00000607443 133 ntBASIC4.46□□□□□ -1.7
SF3A1Q15459 AL161629.2-201ENST00000615347 275 ntBASIC4.46□□□□□ -1.7
SF3A1Q15459 AC022306.2-201ENST00000617563 647 ntBASIC4.46□□□□□ -1.7
SF3A1Q15459 HOTTIP_4.1-201ENST00000618195 165 ntBASIC4.46□□□□□ -1.7
SF3A1Q15459 MIR492-201ENST00000638676 116 ntBASIC4.46□□□□□ -1.7
SF3A1Q15459 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC4.46□□□□□ -1.7
SF3A1Q15459 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SF3A1Q15459 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.45□□□□□ -1.7
SF3A1Q15459 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC4.45□□□□□ -1.7
SF3A1Q15459 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
SF3A1Q15459 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
SF3A1Q15459 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.45□□□□□ -1.7
SF3A1Q15459 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SF3A1Q15459 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
SF3A1Q15459 RNU6-1013P-201ENST00000384180 107 ntBASIC4.45□□□□□ -1.7
SF3A1Q15459 RNU6-328P-201ENST00000390887 106 ntBASIC4.45□□□□□ -1.7
SF3A1Q15459 MIR450B-201ENST00000401182 78 ntBASIC4.45□□□□□ -1.7
SF3A1Q15459 AL159169.1-201ENST00000421119 127 ntBASIC4.45□□□□□ -1.7
SF3A1Q15459 MTCO3P46-201ENST00000425787 232 ntBASIC4.45□□□□□ -1.7
SF3A1Q15459 AC005300.1-201ENST00000428401 373 ntBASIC4.45□□□□□ -1.7
SF3A1Q15459 AC005019.1-201ENST00000436455 431 ntBASIC4.45□□□□□ -1.7
SF3A1Q15459 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC4.45□□□□□ -1.7
SF3A1Q15459 AL671855.1-201ENST00000446875 1203 ntBASIC4.45□□□□□ -1.7
SF3A1Q15459 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.45□□□□□ -1.7
SF3A1Q15459 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC4.45□□□□□ -1.7
SF3A1Q15459 TRBVA-201ENST00000498804 316 ntBASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms