Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 DDX10P1-201ENST00000448545 1933 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL4A3Q01955 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.75□□□□□ -1.81
COL4A3Q01955 Y_RNA.2-201ENST00000362330 96 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 SET-203ENST00000372688 801 ntTSL 2 BASIC3.75□□□□□ -1.81
COL4A3Q01955 Y_RNA.428-201ENST00000384078 102 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 AC017079.2-201ENST00000416102 485 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.75□□□□□ -1.81
COL4A3Q01955 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.75□□□□□ -1.81
COL4A3Q01955 AL353597.2-202ENST00000434901 373 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.75□□□□□ -1.81
COL4A3Q01955 AC010655.1-201ENST00000449336 292 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.75□□□□□ -1.81
COL4A3Q01955 AC010631.1-201ENST00000474150 156 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.75□□□□□ -1.81
COL4A3Q01955 Y_RNA.689-201ENST00000516589 107 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 RN7SKP277-201ENST00000516895 283 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.75□□□□□ -1.81
COL4A3Q01955 CYCSP27-201ENST00000527643 293 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 RPL23AP84-201ENST00000571193 464 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 AC006272.2-201ENST00000594725 163 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 AL158032.1-201ENST00000605401 106 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.75□□□□□ -1.81
COL4A3Q01955 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC3.74□□□□□ -1.81
COL4A3Q01955 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC3.74□□□□□ -1.81
COL4A3Q01955 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL4A3Q01955 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL4A3Q01955 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL4A3Q01955 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL4A3Q01955 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
COL4A3Q01955 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.74□□□□□ -1.81
COL4A3Q01955 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL4A3Q01955 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.74□□□□□ -1.81
COL4A3Q01955 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL4A3Q01955 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC3.74□□□□□ -1.81
COL4A3Q01955 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL4A3Q01955 MT-TC-201ENST00000387405 66 ntBASIC3.74□□□□□ -1.81
COL4A3Q01955 SNORA16.2-201ENST00000390991 127 ntBASIC3.74□□□□□ -1.81
COL4A3Q01955 SNORA75.6-201ENST00000391318 127 ntBASIC3.74□□□□□ -1.81
COL4A3Q01955 Y_RNA.594-201ENST00000410373 140 ntBASIC3.74□□□□□ -1.81
COL4A3Q01955 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.74□□□□□ -1.81
COL4A3Q01955 DPH3P2-201ENST00000422618 250 ntBASIC3.74□□□□□ -1.81
COL4A3Q01955 REREP1Y-201ENST00000422655 198 ntBASIC3.74□□□□□ -1.81
COL4A3Q01955 REREP2Y-201ENST00000439103 200 ntBASIC3.74□□□□□ -1.81
COL4A3Q01955 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.74□□□□□ -1.81
COL4A3Q01955 CECR9-201ENST00000453421 199 ntBASIC3.74□□□□□ -1.81
COL4A3Q01955 RNU7-167P-201ENST00000459160 62 ntBASIC3.74□□□□□ -1.81
COL4A3Q01955 KC877373.1-201ENST00000479066 408 ntBASIC3.74□□□□□ -1.81
COL4A3Q01955 AC092451.1-201ENST00000480211 153 ntBASIC3.74□□□□□ -1.81
COL4A3Q01955 HMGB1P30-201ENST00000492455 606 ntBASIC3.74□□□□□ -1.81
COL4A3Q01955 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.74□□□□□ -1.81
COL4A3Q01955 AC009812.2-201ENST00000517657 457 ntBASIC3.74□□□□□ -1.81
COL4A3Q01955 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.74□□□□□ -1.81
COL4A3Q01955 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.74□□□□□ -1.81
COL4A3Q01955 EIF4BP1-201ENST00000554881 351 ntBASIC3.74□□□□□ -1.81
COL4A3Q01955 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.74□□□□□ -1.81
COL4A3Q01955 AL669831.4-202ENST00000590817 238 ntBASIC3.74□□□□□ -1.81
COL4A3Q01955 PRR13P7-201ENST00000605538 430 ntBASIC3.74□□□□□ -1.81
COL4A3Q01955 AC006329.2-201ENST00000611491 394 ntBASIC3.74□□□□□ -1.81
COL4A3Q01955 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.74□□□□□ -1.81
COL4A3Q01955 AL589994.2-201ENST00000621124 579 ntBASIC3.74□□□□□ -1.81
COL4A3Q01955 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.74□□□□□ -1.81
COL4A3Q01955 AC027287.1-201ENST00000553115 1453 ntBASIC3.74□□□□□ -1.81
COL4A3Q01955 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.74□□□□□ -1.81
COL4A3Q01955 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
COL4A3Q01955 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.74□□□□□ -1.81
COL4A3Q01955 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL4A3Q01955 AL365440.1-201ENST00000436135 2167 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL4A3Q01955 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL4A3Q01955 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL4A3Q01955 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.73□□□□□ -1.81
COL4A3Q01955 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL4A3Q01955 AC005592.1-201ENST00000566527 1640 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL4A3Q01955 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.73□□□□□ -1.81
COL4A3Q01955 RNU6-99P-201ENST00000364721 107 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 Y_RNA.389-201ENST00000383924 113 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 RNU6-784P-201ENST00000384330 106 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 Y_RNA.473-201ENST00000384333 102 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 Y_RNA.493-201ENST00000384422 102 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 Y_RNA.574-201ENST00000384766 95 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 Y_RNA.645-201ENST00000391229 102 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 NDUFS5P1-201ENST00000405668 289 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 RNU4-65P-201ENST00000410473 140 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 HMGB1P12-201ENST00000438594 598 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 BX276092.4-201ENST00000452056 248 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 AC010683.1-201ENST00000473673 378 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 AC010655.3-201ENST00000478818 450 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 AC026784.1-201ENST00000507986 352 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.73□□□□□ -1.81
COL4A3Q01955 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.73□□□□□ -1.81
COL4A3Q01955 AC104695.3-201ENST00000604052 296 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 NUTF2P8-201ENST00000604593 363 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 FAM157A-202ENST00000615155 405 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 MIR7112-201ENST00000616126 65 ntBASIC3.73□□□□□ -1.81
COL4A3Q01955 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL4A3Q01955 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms