Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
HOXA1P49639 AL160275.3-201ENST00000423876 471 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXA1P49639 AL591419.1-201ENST00000427423 339 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 SRIP2-201ENST00000428470 166 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXA1P49639 AC098614.3-201ENST00000438957 440 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 SDAD1P2-201ENST00000441308 2028 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC2.89□□□□□ -1.95
HOXA1P49639 AC104058.1-201ENST00000448028 297 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 RPS15AP27-201ENST00000449183 343 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HOXA1P49639 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXA1P49639 SSXP4-201ENST00000451349 245 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 SCARNA18-201ENST00000459004 134 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 ENSA-210ENST00000503241 574 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXA1P49639 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXA1P49639 TBCAP3-201ENST00000512475 312 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 AC114781.4-201ENST00000513707 639 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 AC112206.3-201ENST00000514578 389 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 RNA5SP315-201ENST00000516340 116 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 RNU6-875P-201ENST00000516488 106 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 RNA5SP312-201ENST00000517068 116 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.89□□□□□ -1.95
HOXA1P49639 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXA1P49639 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HOXA1P49639 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC2.89□□□□□ -1.95
HOXA1P49639 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXA1P49639 AC007224.1-201ENST00000564410 144 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXA1P49639 AC053481.4-201ENST00000583164 216 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 AC018638.8-201ENST00000588755 281 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 AL161798.1-201ENST00000604630 131 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 CTHRC1P1-201ENST00000605383 469 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 LARP7P1-201ENST00000605576 316 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.89□□□□□ -1.95
HOXA1P49639 AC092807.2-201ENST00000609367 243 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 MIR378J-201ENST00000611988 109 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 AC034102.8-201ENST00000615146 484 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 AL359547.2-201ENST00000615810 418 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC2.89□□□□□ -1.95
HOXA1P49639 FP236240.3-201ENST00000623061 327 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 AP003400.5-201ENST00000624827 617 ntBASIC2.89□□□□□ -1.95
HOXA1P49639 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HOXA1P49639 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC2.89□□□□□ -1.95
HOXA1P49639 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC2.89□□□□□ -1.95
HOXA1P49639 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HOXA1P49639 MTND4P14-201ENST00000435799 1354 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 AC092435.3-201ENST00000565538 3654 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
HOXA1P49639 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
HOXA1P49639 RNU6-50P-201ENST00000362356 103 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 RNU6-1303P-201ENST00000364841 107 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 RNU6-715P-201ENST00000365204 103 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC2.88□□□□□ -1.95
HOXA1P49639 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC2.88□□□□□ -1.95
HOXA1P49639 RNU6-213P-201ENST00000384051 104 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 RNU6-817P-201ENST00000391083 104 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 RPS4XP7-201ENST00000406274 780 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 RN7SKP156-201ENST00000410308 342 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 RNU4-46P-201ENST00000410818 138 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 RN7SKP53-201ENST00000411337 315 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC2.88□□□□□ -1.95
HOXA1P49639 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXA1P49639 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.88□□□□□ -1.95
HOXA1P49639 HSPE1P1-201ENST00000421494 318 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXA1P49639 AL117339.2-201ENST00000430475 180 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 ERLEC1P1-201ENST00000433806 578 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 RPS24P13-201ENST00000442520 397 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 PRPS1P1-201ENST00000445305 876 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 RPL39P40-201ENST00000445481 146 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXA1P49639 RNU6-953P-201ENST00000459154 107 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.88□□□□□ -1.95
HOXA1P49639 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXA1P49639 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXA1P49639 APOOP4-201ENST00000513530 597 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 RNU6-56P-201ENST00000516986 93 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 RNU6-1314P-201ENST00000517139 104 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 RPL7P20-201ENST00000520308 745 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 MTND4P7-201ENST00000523876 130 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 CASP1P1-201ENST00000526345 212 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 AL137161.1-201ENST00000532231 390 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.88□□□□□ -1.95
HOXA1P49639 SCOCP1-201ENST00000554676 349 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 AC087499.8-201ENST00000578406 226 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 AC083809.1-201ENST00000615051 472 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 MIR6758-201ENST00000620653 63 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 CCT7-217ENST00000626868 249 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXA1P49639 AL512643.1-201ENST00000635735 524 ntBASIC2.88□□□□□ -1.95
HOXA1P49639 MTND4P12-201ENST00000498999 1377 ntBASIC2.87□□□□□ -1.95
HOXA1P49639 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC2.87□□□□□ -1.95
HOXA1P49639 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.87□□□□□ -1.95
HOXA1P49639 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HOXA1P49639 CBX3P1-201ENST00000325243 554 ntBASIC2.87□□□□□ -1.95
HOXA1P49639 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HOXA1P49639 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HOXA1P49639 RNU6-1252P-201ENST00000363054 104 ntBASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms