Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 RPL30P5-201ENST00000494923 336 ntBASIC0.67□□□□□ -2.3
HMGA1P17096 LTV1P1-201ENST00000510683 1237 ntBASIC0.67□□□□□ -2.3
HMGA1P17096 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC0.67□□□□□ -2.3
HMGA1P17096 Y_RNA.670-201ENST00000516255 105 ntBASIC0.67□□□□□ -2.3
HMGA1P17096 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.67□□□□□ -2.3
HMGA1P17096 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC0.67□□□□□ -2.3
HMGA1P17096 MED28P6-201ENST00000558776 231 ntBASIC0.67□□□□□ -2.3
HMGA1P17096 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC0.67□□□□□ -2.3
HMGA1P17096 AC005786.1-201ENST00000588553 154 ntBASIC0.67□□□□□ -2.3
HMGA1P17096 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC0.67□□□□□ -2.3
HMGA1P17096 AC012213.4-201ENST00000606457 354 ntBASIC0.67□□□□□ -2.3
HMGA1P17096 MTND5P9-201ENST00000503854 1755 ntBASIC0.67□□□□□ -2.3
HMGA1P17096 RNU6-270P-201ENST00000364131 105 ntBASIC0.66□□□□□ -2.3
HMGA1P17096 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.66□□□□□ -2.3
HMGA1P17096 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC0.66□□□□□ -2.3
HMGA1P17096 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC0.66□□□□□ -2.3
HMGA1P17096 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC0.66□□□□□ -2.3
HMGA1P17096 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC0.66□□□□□ -2.3
HMGA1P17096 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC0.66□□□□□ -2.3
HMGA1P17096 RNU5F-8P-201ENST00000515941 111 ntBASIC0.66□□□□□ -2.3
HMGA1P17096 AC107953.1-201ENST00000522216 297 ntBASIC0.66□□□□□ -2.3
HMGA1P17096 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC0.66□□□□□ -2.3
HMGA1P17096 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC0.66□□□□□ -2.3
HMGA1P17096 HSPE1P19-201ENST00000603327 295 ntBASIC0.66□□□□□ -2.3
HMGA1P17096 AC008945.2-201ENST00000606056 604 ntBASIC0.66□□□□□ -2.3
HMGA1P17096 AL355802.3-201ENST00000607571 545 ntBASIC0.66□□□□□ -2.3
HMGA1P17096 AC110792.4-201ENST00000609843 298 ntBASIC0.66□□□□□ -2.3
HMGA1P17096 FRG1HP-204ENST00000617940 757 ntBASIC0.66□□□□□ -2.3
HMGA1P17096 AP003485.1-201ENST00000625093 753 ntBASIC0.66□□□□□ -2.3
HMGA1P17096 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC0.65□□□□□ -2.31
HMGA1P17096 Y_RNA.67-201ENST00000362870 100 ntBASIC0.65□□□□□ -2.31
HMGA1P17096 RNU6-1105P-201ENST00000384774 107 ntBASIC0.65□□□□□ -2.31
HMGA1P17096 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.65□□□□□ -2.31
HMGA1P17096 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.65□□□□□ -2.31
HMGA1P17096 RPL27AP8-201ENST00000424277 446 ntBASIC0.65□□□□□ -2.31
HMGA1P17096 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC0.65□□□□□ -2.31
HMGA1P17096 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.65□□□□□ -2.31
HMGA1P17096 RNU6-775P-201ENST00000459318 96 ntBASIC0.65□□□□□ -2.31
HMGA1P17096 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC0.65□□□□□ -2.31
HMGA1P17096 AC099513.1-201ENST00000490423 301 ntBASIC0.65□□□□□ -2.31
HMGA1P17096 HMGB1P35-201ENST00000503360 598 ntBASIC0.65□□□□□ -2.31
HMGA1P17096 AC022447.1-201ENST00000515358 464 ntBASIC0.65□□□□□ -2.31
HMGA1P17096 RNA5SP137-201ENST00000516833 135 ntBASIC0.65□□□□□ -2.31
HMGA1P17096 AC103833.1-201ENST00000517442 172 ntBASIC0.65□□□□□ -2.31
HMGA1P17096 LY96-202ENST00000518893 430 ntTSL 3 BASIC0.65□□□□□ -2.31
HMGA1P17096 AC004923.2-201ENST00000529649 369 ntBASIC0.65□□□□□ -2.31
HMGA1P17096 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC0.65□□□□□ -2.31
HMGA1P17096 OR8K4P-201ENST00000534608 872 ntBASIC0.65□□□□□ -2.31
HMGA1P17096 AC022254.1-201ENST00000567857 235 ntBASIC0.65□□□□□ -2.31
HMGA1P17096 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC0.65□□□□□ -2.31
HMGA1P17096 MIR98-201ENST00000606724 119 ntBASIC0.65□□□□□ -2.31
HMGA1P17096 RMST_5.1-201ENST00000618704 126 ntBASIC0.65□□□□□ -2.31
HMGA1P17096 MIR7157-201ENST00000635801 60 ntBASIC0.65□□□□□ -2.31
HMGA1P17096 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.64□□□□□ -2.31
HMGA1P17096 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
HMGA1P17096 RNA5SP499-201ENST00000363982 119 ntBASIC0.64□□□□□ -2.31
HMGA1P17096 SNORA70.7-201ENST00000384159 133 ntBASIC0.64□□□□□ -2.31
HMGA1P17096 Y_RNA.466-201ENST00000384294 113 ntBASIC0.64□□□□□ -2.31
HMGA1P17096 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
HMGA1P17096 MIR936-201ENST00000401264 98 ntBASIC0.64□□□□□ -2.31
HMGA1P17096 AC099548.1-201ENST00000421443 426 ntBASIC0.64□□□□□ -2.31
HMGA1P17096 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC0.64□□□□□ -2.31
HMGA1P17096 C1DP3-201ENST00000455013 423 ntBASIC0.64□□□□□ -2.31
HMGA1P17096 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC0.64□□□□□ -2.31
HMGA1P17096 AL133373.1-201ENST00000497098 94 ntBASIC0.64□□□□□ -2.31
HMGA1P17096 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC0.64□□□□□ -2.31
HMGA1P17096 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
HMGA1P17096 RNU7-40P-201ENST00000516397 64 ntBASIC0.64□□□□□ -2.31
HMGA1P17096 RNA5SP480-201ENST00000516840 109 ntBASIC0.64□□□□□ -2.31
HMGA1P17096 OR5B19P-201ENST00000531766 928 ntBASIC0.64□□□□□ -2.31
HMGA1P17096 AC004492.1-201ENST00000607036 742 ntBASIC0.64□□□□□ -2.31
HMGA1P17096 AC106800.4-201ENST00000614905 153 ntBASIC0.64□□□□□ -2.31
HMGA1P17096 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC0.64□□□□□ -2.31
HMGA1P17096 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
HMGA1P17096 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
HMGA1P17096 RNU6-1155P-201ENST00000363554 107 ntBASIC0.63□□□□□ -2.31
HMGA1P17096 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC0.63□□□□□ -2.31
HMGA1P17096 Y_RNA.393-201ENST00000383936 102 ntBASIC0.63□□□□□ -2.31
HMGA1P17096 HMGB1P9-201ENST00000429856 646 ntBASIC0.63□□□□□ -2.31
HMGA1P17096 MTND5P15-201ENST00000434246 349 ntBASIC0.63□□□□□ -2.31
HMGA1P17096 THAP5P1-201ENST00000439089 262 ntBASIC0.63□□□□□ -2.31
HMGA1P17096 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.63□□□□□ -2.31
HMGA1P17096 RPL39P28-201ENST00000465655 155 ntBASIC0.63□□□□□ -2.31
HMGA1P17096 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC0.63□□□□□ -2.31
HMGA1P17096 RPL31P60-201ENST00000478450 367 ntBASIC0.63□□□□□ -2.31
HMGA1P17096 RNU6-1308P-201ENST00000516817 103 ntBASIC0.63□□□□□ -2.31
HMGA1P17096 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.63□□□□□ -2.31
HMGA1P17096 AC090115.3-201ENST00000553218 849 ntBASIC0.63□□□□□ -2.31
HMGA1P17096 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC0.63□□□□□ -2.31
HMGA1P17096 AL031274.2-201ENST00000599419 203 ntBASIC0.63□□□□□ -2.31
HMGA1P17096 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC0.63□□□□□ -2.31
HMGA1P17096 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC0.63□□□□□ -2.31
HMGA1P17096 OR5H6-203ENST00000642105 978 ntBASIC0.63□□□□□ -2.31
HMGA1P17096 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.63□□□□□ -2.31
HMGA1P17096 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.63□□□□□ -2.31
HMGA1P17096 MTND4P31-201ENST00000425607 1343 ntBASIC0.63□□□□□ -2.31
HMGA1P17096 OR4G2P-201ENST00000328113 903 ntBASIC0.62□□□□□ -2.31
HMGA1P17096 RNU6-989P-201ENST00000362756 107 ntBASIC0.62□□□□□ -2.31
HMGA1P17096 SNORD114-26-201ENST00000363543 72 ntBASIC0.62□□□□□ -2.31
HMGA1P17096 RNU6-1235P-201ENST00000384559 107 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms