Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.54□□□□□ -2
SDC3O75056 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.54□□□□□ -2
SDC3O75056 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.54□□□□□ -2
SDC3O75056 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
SDC3O75056 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.54□□□□□ -2
SDC3O75056 RNU6-1167P-201ENST00000363227 94 ntBASIC2.54□□□□□ -2
SDC3O75056 SNORA70B-201ENST00000384210 135 ntBASIC2.54□□□□□ -2
SDC3O75056 SNORA67.4-201ENST00000384688 142 ntBASIC2.54□□□□□ -2
SDC3O75056 NDUFS5P1-201ENST00000405668 289 ntBASIC2.54□□□□□ -2
SDC3O75056 RPLP0P7-201ENST00000416050 667 ntBASIC2.54□□□□□ -2
SDC3O75056 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.54□□□□□ -2
SDC3O75056 MTND1P28-201ENST00000435623 950 ntBASIC2.54□□□□□ -2
SDC3O75056 CECR9-201ENST00000453421 199 ntBASIC2.54□□□□□ -2
SDC3O75056 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.54□□□□□ -2
SDC3O75056 SNORD97-201ENST00000459187 142 ntBASIC2.54□□□□□ -2
SDC3O75056 RBM43P1-201ENST00000476891 1081 ntBASIC2.54□□□□□ -2
SDC3O75056 YWHAEP4-201ENST00000505390 198 ntBASIC2.54□□□□□ -2
SDC3O75056 RNA5SP24-201ENST00000516478 95 ntBASIC2.54□□□□□ -2
SDC3O75056 AP006587.4-201ENST00000526053 529 ntBASIC2.54□□□□□ -2
SDC3O75056 AC022878.1-201ENST00000530684 149 ntBASIC2.54□□□□□ -2
SDC3O75056 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.54□□□□□ -2
SDC3O75056 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.54□□□□□ -2
SDC3O75056 AC090616.3-201ENST00000582184 217 ntBASIC2.54□□□□□ -2
SDC3O75056 MIR3670-2-201ENST00000582974 65 ntBASIC2.54□□□□□ -2
SDC3O75056 MIR3605-201ENST00000583214 100 ntBASIC2.54□□□□□ -2
SDC3O75056 MIR3670-1-201ENST00000584160 65 ntBASIC2.54□□□□□ -2
SDC3O75056 MIR3670-3-201ENST00000584855 65 ntBASIC2.54□□□□□ -2
SDC3O75056 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.54□□□□□ -2
SDC3O75056 AL161798.1-201ENST00000604630 131 ntBASIC2.54□□□□□ -2
SDC3O75056 RNU6-87P-201ENST00000607561 108 ntBASIC2.54□□□□□ -2
SDC3O75056 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.54□□□□□ -2
SDC3O75056 MIR3670-4-201ENST00000612260 65 ntBASIC2.54□□□□□ -2
SDC3O75056 AC068057.2-201ENST00000624047 895 ntBASIC2.54□□□□□ -2
SDC3O75056 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
SDC3O75056 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.54□□□□□ -2
SDC3O75056 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.54□□□□□ -2
SDC3O75056 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
SDC3O75056 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.54□□□□□ -2
SDC3O75056 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.53□□□□□ -2
SDC3O75056 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.53□□□□□ -2
SDC3O75056 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
SDC3O75056 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.53□□□□□ -2
SDC3O75056 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.53□□□□□ -2
SDC3O75056 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
SDC3O75056 RNU5F-7P-201ENST00000363696 115 ntBASIC2.53□□□□□ -2
SDC3O75056 Y_RNA.169-201ENST00000363745 96 ntBASIC2.53□□□□□ -2
SDC3O75056 SNORA68.1-201ENST00000364537 132 ntBASIC2.53□□□□□ -2
SDC3O75056 RNY4P16-201ENST00000364768 94 ntBASIC2.53□□□□□ -2
SDC3O75056 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
SDC3O75056 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC2.53□□□□□ -2
SDC3O75056 AC023141.4-201ENST00000412031 328 ntBASIC2.53□□□□□ -2
SDC3O75056 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.53□□□□□ -2
SDC3O75056 AL356583.2-201ENST00000426536 280 ntBASIC2.53□□□□□ -2
SDC3O75056 ISCA1P1-201ENST00000426679 387 ntBASIC2.53□□□□□ -2
SDC3O75056 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC2.53□□□□□ -2
SDC3O75056 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC2.53□□□□□ -2
SDC3O75056 USP9YP12-201ENST00000450481 570 ntBASIC2.53□□□□□ -2
SDC3O75056 SSXP1-201ENST00000453640 473 ntBASIC2.53□□□□□ -2
SDC3O75056 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC2.53□□□□□ -2
SDC3O75056 AP000705.1-201ENST00000454567 350 ntBASIC2.53□□□□□ -2
SDC3O75056 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.53□□□□□ -2
SDC3O75056 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.53□□□□□ -2
SDC3O75056 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.53□□□□□ -2
SDC3O75056 RN7SL297P-201ENST00000483161 293 ntBASIC2.53□□□□□ -2
SDC3O75056 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC2.53□□□□□ -2
SDC3O75056 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.53□□□□□ -2
SDC3O75056 AC008549.1-201ENST00000512900 643 ntBASIC2.53□□□□□ -2
SDC3O75056 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2.53□□□□□ -2
SDC3O75056 FABP5P5-201ENST00000515537 406 ntBASIC2.53□□□□□ -2
SDC3O75056 SNORA9.3-201ENST00000516383 129 ntBASIC2.53□□□□□ -2
SDC3O75056 RPPH1-2P-201ENST00000516688 293 ntBASIC2.53□□□□□ -2
SDC3O75056 AC026407.1-201ENST00000518369 204 ntBASIC2.53□□□□□ -2
SDC3O75056 AC109329.2-201ENST00000519658 482 ntBASIC2.53□□□□□ -2
SDC3O75056 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC2.53□□□□□ -2
SDC3O75056 MRPS36P5-201ENST00000551909 298 ntBASIC2.53□□□□□ -2
SDC3O75056 MIR3117-201ENST00000584034 78 ntBASIC2.53□□□□□ -2
SDC3O75056 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC2.53□□□□□ -2
SDC3O75056 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.53□□□□□ -2
SDC3O75056 AC012065.4-201ENST00000602445 679 ntBASIC2.53□□□□□ -2
SDC3O75056 AL670379.6-201ENST00000603753 252 ntBASIC2.53□□□□□ -2
SDC3O75056 AC098826.3-201ENST00000603823 466 ntBASIC2.53□□□□□ -2
SDC3O75056 AL670379.11-201ENST00000604059 253 ntBASIC2.53□□□□□ -2
SDC3O75056 AC104763.2-201ENST00000604179 382 ntBASIC2.53□□□□□ -2
SDC3O75056 AC112191.3-201ENST00000604371 277 ntBASIC2.53□□□□□ -2
SDC3O75056 AC008162.1-201ENST00000604718 254 ntBASIC2.53□□□□□ -2
SDC3O75056 AL670379.1-201ENST00000604752 252 ntBASIC2.53□□□□□ -2
SDC3O75056 AP000860.1-201ENST00000605250 559 ntBASIC2.53□□□□□ -2
SDC3O75056 AL670379.5-201ENST00000605253 252 ntBASIC2.53□□□□□ -2
SDC3O75056 AL670379.12-201ENST00000605291 253 ntBASIC2.53□□□□□ -2
SDC3O75056 AL670379.8-201ENST00000605353 252 ntBASIC2.53□□□□□ -2
SDC3O75056 AL670379.7-201ENST00000605823 252 ntBASIC2.53□□□□□ -2
SDC3O75056 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.53□□□□□ -2
SDC3O75056 AC025034.2-201ENST00000623264 286 ntBASIC2.53□□□□□ -2
SDC3O75056 FRG1KP-201ENST00000623592 341 ntBASIC2.53□□□□□ -2
SDC3O75056 AC019226.2-201ENST00000625973 424 ntBASIC2.53□□□□□ -2
SDC3O75056 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.53□□□□□ -2
SDC3O75056 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.53□□□□□ -2
SDC3O75056 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2
SDC3O75056 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.53□□□□□ -2
SDC3O75056 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 220.1 ms