Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 U8.7-201ENST00000364940 136 ntBASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 SNORA51.8-201ENST00000384234 132 ntBASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 AL358075.3-201ENST00000426289 226 ntBASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 RN7SL172P-201ENST00000460535 303 ntBASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 SNORA43.2-201ENST00000516652 128 ntBASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 AC107918.3-201ENST00000533272 382 ntBASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 AC136624.4-201ENST00000573044 370 ntBASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 MIR4716-201ENST00000579628 84 ntBASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 AC104964.3-201ENST00000606115 2860 ntBASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHB3Q9Y5E6 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 AC018809.2-201ENST00000602436 3823 ntBASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 RNU6-873P-201ENST00000363833 107 ntBASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 SNORA58B-201ENST00000364259 136 ntBASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 RNU6-1074P-201ENST00000383995 104 ntBASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 RNU6-146P-201ENST00000384602 108 ntBASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 AL158823.1-201ENST00000418441 478 ntBASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 AC063976.4-201ENST00000421971 163 ntBASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 UBE2Q2P9-201ENST00000490086 202 ntBASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 RNU6-941P-201ENST00000516346 108 ntBASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 FTH1P11-201ENST00000517577 551 ntBASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 MIR4311-201ENST00000580794 100 ntBASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 AL078604.3-201ENST00000615580 211 ntBASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 AC132068.1-201ENST00000623805 459 ntBASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.35□□□□□ -1.55
PCDHB3Q9Y5E6 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 AC068700.1-201ENST00000565862 3754 ntBASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 RNU4-10P-201ENST00000364383 140 ntBASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 SNORD32A-201ENST00000364805 84 ntBASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 MIR888-201ENST00000401186 77 ntBASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 RNU2-54P-201ENST00000410299 190 ntBASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 AL138785.1-201ENST00000425821 331 ntBASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 AC098614.2-201ENST00000426040 255 ntBASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 RPL23AP95-201ENST00000426806 265 ntBASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 AC073465.2-201ENST00000440938 498 ntBASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 RN7SKP122-201ENST00000515923 296 ntBASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 NACAP3-201ENST00000552100 481 ntBASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 MIR4512-201ENST00000583257 77 ntBASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 AC012616.1-201ENST00000600294 197 ntBASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 PSMD5-AS1-215ENST00000640622 205 ntBASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 AL022311.1-201ENST00000623726 19416 ntBASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.34□□□□□ -1.55
PCDHB3Q9Y5E6 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
PCDHB3Q9Y5E6 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.34□□□□□ -1.56
PCDHB3Q9Y5E6 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.56
PCDHB3Q9Y5E6 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.34□□□□□ -1.56
PCDHB3Q9Y5E6 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
PCDHB3Q9Y5E6 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
PCDHB3Q9Y5E6 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
PCDHB3Q9Y5E6 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
PCDHB3Q9Y5E6 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PCDHB3Q9Y5E6 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms