Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 RNU6-914P-201ENST00000516749 109 ntBASIC3.21□□□□□ -1.9
LIMA1Q9UHB6 RNU6-143P-201ENST00000516942 93 ntBASIC3.21□□□□□ -1.9
LIMA1Q9UHB6 SNORA31.21-201ENST00000517180 77 ntBASIC3.21□□□□□ -1.9
LIMA1Q9UHB6 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC3.21□□□□□ -1.9
LIMA1Q9UHB6 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.21□□□□□ -1.9
LIMA1Q9UHB6 MIR1254-2-201ENST00000579553 63 ntBASIC3.21□□□□□ -1.9
LIMA1Q9UHB6 Z84480.1-201ENST00000605131 311 ntBASIC3.21□□□□□ -1.9
LIMA1Q9UHB6 AC107871.2-201ENST00000612894 502 ntBASIC3.21□□□□□ -1.9
LIMA1Q9UHB6 AC012409.4-201ENST00000612923 249 ntBASIC3.21□□□□□ -1.9
LIMA1Q9UHB6 AL161629.2-201ENST00000615347 275 ntBASIC3.21□□□□□ -1.9
LIMA1Q9UHB6 AC091953.5-201ENST00000622919 233 ntBASIC3.21□□□□□ -1.9
LIMA1Q9UHB6 AC025034.2-201ENST00000623264 286 ntBASIC3.21□□□□□ -1.9
LIMA1Q9UHB6 AP003122.6-201ENST00000623831 495 ntBASIC3.21□□□□□ -1.9
LIMA1Q9UHB6 AC009161.2-201ENST00000624626 138 ntBASIC3.21□□□□□ -1.9
LIMA1Q9UHB6 AL512643.1-201ENST00000635735 524 ntBASIC3.21□□□□□ -1.9
LIMA1Q9UHB6 Z99571.1-201ENST00000636677 394 ntBASIC3.21□□□□□ -1.9
LIMA1Q9UHB6 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.21□□□□□ -1.9
LIMA1Q9UHB6 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.21□□□□□ -1.9
LIMA1Q9UHB6 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.21□□□□□ -1.9
LIMA1Q9UHB6 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.21□□□□□ -1.9
LIMA1Q9UHB6 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.21□□□□□ -1.9
LIMA1Q9UHB6 ASNSP3-201ENST00000451989 1306 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 AC092447.7-201ENST00000422212 1621 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 Y_RNA.296-201ENST00000364930 108 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 RNU6-61P-201ENST00000365528 109 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 MIR181A2-201ENST00000384863 110 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 MIR670-201ENST00000390142 98 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 GSTA9P-201ENST00000406231 611 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 AL031779.1-201ENST00000415663 330 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 HMGN2P30-201ENST00000423237 256 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 AC093151.1-201ENST00000427711 313 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 RPL37P4-201ENST00000448908 268 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 MRPS17P3-201ENST00000465453 385 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 SUMO2P6-201ENST00000505273 288 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 AC108078.1-201ENST00000508073 725 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 AC010493.1-201ENST00000513479 292 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 SNORD27.1-201ENST00000516319 72 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 MTCYBP20-201ENST00000524239 1129 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 ADI1P3-201ENST00000549509 470 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 MIR5004-201ENST00000579078 107 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 NUTF2P8-201ENST00000604593 363 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 AC019176.2-201ENST00000611579 315 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 DUSP12P1-201ENST00000612874 516 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 AL359547.2-201ENST00000615810 418 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 MTND4P5-201ENST00000435821 1374 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 AP003122.5-201ENST00000527668 3766 ntBASIC3.2□□□□□ -1.9
LIMA1Q9UHB6 FAM35CP-201ENST00000554755 2470 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 RNU6-799P-201ENST00000363567 107 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 RNA5SP267-201ENST00000364893 126 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 CD24P4-201ENST00000382840 243 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 RNU6-259P-201ENST00000383999 107 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 MIR7-3-201ENST00000384898 110 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 U3.19-201ENST00000390893 196 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 SNORD88.1-201ENST00000408684 91 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 RN7SKP27-201ENST00000410684 333 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 RNA5SP120-201ENST00000410900 112 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 MTCO3P41-201ENST00000414801 328 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 AC073464.1-201ENST00000429823 534 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 RPS15AP9-201ENST00000439856 381 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 AC022364.2-201ENST00000457963 554 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 AC092798.1-201ENST00000458542 409 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 RNU7-23P-201ENST00000459465 62 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 RPL21P129-201ENST00000491732 478 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 MTND4LP22-201ENST00000508209 276 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 AC008885.1-201ENST00000514930 301 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 RNU6-123P-201ENST00000516163 102 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 AP003122.3-201ENST00000526316 255 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 AC084851.1-201ENST00000529105 249 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 NTS-203ENST00000551529 801 ntTSL 3 BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 AL359212.1-201ENST00000556608 614 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 MIR4429-201ENST00000580105 73 ntBASIC3.19□□□□□ -1.9
LIMA1Q9UHB6 MTND4LP5-201ENST00000605152 292 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms