Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC112204.1-201ENST00000502591 103 ntBASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 AC010486.2-201ENST00000505572 483 ntBASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 RNA5SP471-201ENST00000516971 106 ntBASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 RN7SKP258-201ENST00000517151 304 ntBASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 AP003467.2-201ENST00000520175 319 ntBASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 DUXAP5-201ENST00000529668 529 ntBASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 AC145350.1-201ENST00000567426 208 ntBASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 AC091953.2-201ENST00000623979 160 ntBASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 AC007494.3-201ENST00000624660 743 ntBASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.7□□□□□ -1.98
VPS54Q9P1Q0 RNU6-1167P-201ENST00000363227 94 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 NDUFS5P1-201ENST00000405668 289 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 RNU6-193P-201ENST00000410977 107 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 GTF2IP20-201ENST00000431663 360 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 AC236972.1-201ENST00000433225 199 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 SNORA59A-201ENST00000459326 152 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 RPL31P41-201ENST00000477967 372 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 AP000797.1-201ENST00000478870 387 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 AC114786.4-201ENST00000508771 728 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 AP003122.3-201ENST00000526316 255 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 ARL2BPP2-201ENST00000550907 489 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 MTND3P12-201ENST00000559068 328 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 AC010546.1-201ENST00000569391 485 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 NIFKP6-201ENST00000598115 845 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 AL022161.1-201ENST00000604390 213 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 AC121334.2-201ENST00000605387 271 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 AC006338.1-201ENST00000618453 749 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 AC025034.2-201ENST00000623264 286 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 IGHVIII-44-202ENST00000636235 289 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 AC006020.1-201ENST00000420179 1854 ntBASIC2.69□□□□□ -1.98
VPS54Q9P1Q0 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 RNU6-512P-201ENST00000364438 103 ntBASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 SNORD114-30-201ENST00000364448 72 ntBASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 Y_RNA.245-201ENST00000364493 95 ntBASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 AL445567.1-201ENST00000439121 144 ntBASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 RPS15AP27-201ENST00000449183 343 ntBASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 ZNF736P5Y-201ENST00000451173 805 ntBASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 AP006587.4-201ENST00000526053 529 ntBASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 AP003181.2-201ENST00000528941 181 ntBASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 MIR3915-201ENST00000578518 97 ntBASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 ABBA01006766.1-201ENST00000584728 294 ntBASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 AC004805.2-201ENST00000605382 482 ntBASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 uc_338.12-201ENST00000616344 181 ntBASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 AL160394.1-201ENST00000624765 724 ntBASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 ATP8A2P3-201ENST00000426792 1536 ntBASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 AC092104.1-201ENST00000497346 1441 ntBASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
VPS54Q9P1Q0 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 MAPK10-266ENST00000641066 6555 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 RNU5E-5P-201ENST00000365379 116 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 OR5H15-201ENST00000383696 930 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 SNORD115.1-201ENST00000391109 76 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AL139095.1-201ENST00000404326 391 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 RNU2-36P-201ENST00000410361 191 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 Y_RNA.608-201ENST00000410647 95 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 RNU2-62P-201ENST00000410868 191 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AL096701.2-201ENST00000416920 238 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 RPS15AP12-201ENST00000419498 388 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 Z99497.1-201ENST00000421282 135 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 ELOCP14-201ENST00000428070 331 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AC092427.1-202ENST00000430569 476 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 SNRPEP9-201ENST00000436794 238 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AC018634.1-201ENST00000437554 401 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 ELOCP7-201ENST00000439968 331 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 MTND1P30-201ENST00000441241 901 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 UBE2D3P4-201ENST00000441973 436 ntBASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms