Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 SNORA14.1-201ENST00000516113 141 ntBASIC3.85□□□□□ -1.79
TDP1Q9NUW8 RNU6-1088P-201ENST00000516850 104 ntBASIC3.85□□□□□ -1.79
TDP1Q9NUW8 RNU6-273P-201ENST00000516937 96 ntBASIC3.85□□□□□ -1.79
TDP1Q9NUW8 RN7SKP289-201ENST00000517244 295 ntBASIC3.85□□□□□ -1.79
TDP1Q9NUW8 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.85□□□□□ -1.79
TDP1Q9NUW8 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.85□□□□□ -1.79
TDP1Q9NUW8 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.85□□□□□ -1.79
TDP1Q9NUW8 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC3.85□□□□□ -1.79
TDP1Q9NUW8 AC012119.1-201ENST00000603184 222 ntBASIC3.85□□□□□ -1.79
TDP1Q9NUW8 uc_338.15-201ENST00000615470 191 ntBASIC3.85□□□□□ -1.79
TDP1Q9NUW8 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.85□□□□□ -1.79
TDP1Q9NUW8 MTND1P37-201ENST00000636562 264 ntBASIC3.85□□□□□ -1.79
TDP1Q9NUW8 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
TDP1Q9NUW8 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
TDP1Q9NUW8 AC116096.1-201ENST00000566804 2314 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.84□□□□□ -1.79
TDP1Q9NUW8 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
TDP1Q9NUW8 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
TDP1Q9NUW8 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
TDP1Q9NUW8 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
TDP1Q9NUW8 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
TDP1Q9NUW8 Y_RNA.58-201ENST00000362807 102 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 Y_RNA.154-201ENST00000363624 102 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 RNY3P1-201ENST00000365085 102 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 RNY3-201ENST00000365484 102 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
TDP1Q9NUW8 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
TDP1Q9NUW8 Y_RNA.490-201ENST00000384413 102 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 MIR578-201ENST00000384828 96 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
TDP1Q9NUW8 RNU2-33P-201ENST00000410344 192 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
TDP1Q9NUW8 RPL21P90-201ENST00000415692 466 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 RPL7P10-201ENST00000417407 739 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.84□□□□□ -1.79
TDP1Q9NUW8 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.84□□□□□ -1.79
TDP1Q9NUW8 AC005019.1-201ENST00000436455 431 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 RPL21P23-201ENST00000446654 460 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.84□□□□□ -1.79
TDP1Q9NUW8 AL360271.2-201ENST00000447710 161 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 AC233279.1-201ENST00000455300 423 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 VN1R17P-201ENST00000472048 1090 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 AL160314.1-201ENST00000490836 438 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 TRBVA-201ENST00000498804 316 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 RNA5SP208-201ENST00000516156 78 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 RNU6-256P-201ENST00000516747 97 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 RNU6-143P-201ENST00000516942 93 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 ATP5F1P5-201ENST00000526403 760 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.84□□□□□ -1.79
TDP1Q9NUW8 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.84□□□□□ -1.79
TDP1Q9NUW8 HPRT1P3-201ENST00000539521 576 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.84□□□□□ -1.79
TDP1Q9NUW8 AC073539.2-201ENST00000597113 165 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 AL353621.2-201ENST00000605340 133 ntBASIC3.84□□□□□ -1.79
TDP1Q9NUW8 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.84□□□□□ -1.79
TDP1Q9NUW8 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.84□□□□□ -1.79
TDP1Q9NUW8 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.84□□□□□ -1.79
TDP1Q9NUW8 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.84□□□□□ -1.79
TDP1Q9NUW8 MFSD8-236ENST00000641509 4050 ntBASIC3.84□□□□□ -1.8
TDP1Q9NUW8 OTUD4P1-201ENST00000237841 3067 ntBASIC3.84□□□□□ -1.8
TDP1Q9NUW8 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
TDP1Q9NUW8 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
TDP1Q9NUW8 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.83□□□□□ -1.8
TDP1Q9NUW8 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.83□□□□□ -1.8
TDP1Q9NUW8 Y_RNA.67-201ENST00000362870 100 ntBASIC3.83□□□□□ -1.8
TDP1Q9NUW8 RNU6-1303P-201ENST00000364841 107 ntBASIC3.83□□□□□ -1.8
TDP1Q9NUW8 RNU6-741P-201ENST00000383889 107 ntBASIC3.83□□□□□ -1.8
TDP1Q9NUW8 RNA5SP129-201ENST00000410276 118 ntBASIC3.83□□□□□ -1.8
TDP1Q9NUW8 RPS20P15-201ENST00000412792 311 ntBASIC3.83□□□□□ -1.8
TDP1Q9NUW8 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.83□□□□□ -1.8
TDP1Q9NUW8 AL590383.1-201ENST00000428602 75 ntBASIC3.83□□□□□ -1.8
TDP1Q9NUW8 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.83□□□□□ -1.8
TDP1Q9NUW8 AC073063.1-201ENST00000434352 607 ntBASIC3.83□□□□□ -1.8
TDP1Q9NUW8 RPL23AP83-201ENST00000434984 473 ntBASIC3.83□□□□□ -1.8
TDP1Q9NUW8 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.83□□□□□ -1.8
TDP1Q9NUW8 CYCSP35-201ENST00000451978 304 ntBASIC3.83□□□□□ -1.8
TDP1Q9NUW8 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC3.83□□□□□ -1.8
TDP1Q9NUW8 AC087884.1-201ENST00000469738 328 ntBASIC3.83□□□□□ -1.8
TDP1Q9NUW8 MTND4P17-201ENST00000470444 350 ntBASIC3.83□□□□□ -1.8
TDP1Q9NUW8 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.83□□□□□ -1.8
TDP1Q9NUW8 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.83□□□□□ -1.8
TDP1Q9NUW8 RNU2-58P-201ENST00000516403 183 ntBASIC3.83□□□□□ -1.8
TDP1Q9NUW8 RNU6-1315P-201ENST00000517187 99 ntBASIC3.83□□□□□ -1.8
TDP1Q9NUW8 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC3.83□□□□□ -1.8
TDP1Q9NUW8 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.83□□□□□ -1.8
TDP1Q9NUW8 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.83□□□□□ -1.8
TDP1Q9NUW8 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.83□□□□□ -1.8
TDP1Q9NUW8 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
TDP1Q9NUW8 MIR5692A1-201ENST00000580523 69 ntBASIC3.83□□□□□ -1.8
TDP1Q9NUW8 MIR3941-201ENST00000582572 103 ntBASIC3.83□□□□□ -1.8
TDP1Q9NUW8 MIR3672-201ENST00000584290 82 ntBASIC3.83□□□□□ -1.8
TDP1Q9NUW8 MIR548AC-201ENST00000585049 88 ntBASIC3.83□□□□□ -1.8
TDP1Q9NUW8 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.83□□□□□ -1.8
TDP1Q9NUW8 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.83□□□□□ -1.8
TDP1Q9NUW8 AL353746.1-201ENST00000566293 6881 ntBASIC3.83□□□□□ -1.8
TDP1Q9NUW8 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
TDP1Q9NUW8 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
TDP1Q9NUW8 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
TDP1Q9NUW8 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
TDP1Q9NUW8 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 129 ms