Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
USP28Q96RU2 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
USP28Q96RU2 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.94□□□□□ -1.94
USP28Q96RU2 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
USP28Q96RU2 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
USP28Q96RU2 AC127391.1-201ENST00000411737 98 ntBASIC2.94□□□□□ -1.94
USP28Q96RU2 MTND3P17-201ENST00000416968 344 ntBASIC2.94□□□□□ -1.94
USP28Q96RU2 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC2.94□□□□□ -1.94
USP28Q96RU2 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC2.94□□□□□ -1.94
USP28Q96RU2 ARPC3P1-201ENST00000437218 533 ntBASIC2.94□□□□□ -1.94
USP28Q96RU2 AC105272.1-201ENST00000438604 198 ntBASIC2.94□□□□□ -1.94
USP28Q96RU2 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.94□□□□□ -1.94
USP28Q96RU2 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC2.94□□□□□ -1.94
USP28Q96RU2 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.94□□□□□ -1.94
USP28Q96RU2 AC092798.1-201ENST00000458542 409 ntBASIC2.94□□□□□ -1.94
USP28Q96RU2 AC004924.1-201ENST00000480160 781 ntBASIC2.94□□□□□ -1.94
USP28Q96RU2 RPL9P6-201ENST00000492764 598 ntBASIC2.94□□□□□ -1.94
USP28Q96RU2 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC2.94□□□□□ -1.94
USP28Q96RU2 LEF1-218ENST00000512172 598 ntTSL 2 BASIC2.94□□□□□ -1.94
USP28Q96RU2 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.94□□□□□ -1.94
USP28Q96RU2 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC2.94□□□□□ -1.94
USP28Q96RU2 AC103783.1-201ENST00000520506 373 ntBASIC2.94□□□□□ -1.94
USP28Q96RU2 AC022616.3-201ENST00000523940 148 ntBASIC2.94□□□□□ -1.94
USP28Q96RU2 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
USP28Q96RU2 DEFB108D-201ENST00000527787 222 ntBASIC2.94□□□□□ -1.94
USP28Q96RU2 AC243972.3-201ENST00000539655 198 ntBASIC2.94□□□□□ -1.94
USP28Q96RU2 AC004486.1-201ENST00000546846 233 ntBASIC2.94□□□□□ -1.94
USP28Q96RU2 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.94□□□□□ -1.94
USP28Q96RU2 AC128657.1-201ENST00000549459 145 ntBASIC2.94□□□□□ -1.94
USP28Q96RU2 NTS-203ENST00000551529 801 ntTSL 3 BASIC2.94□□□□□ -1.94
USP28Q96RU2 MIR3609-201ENST00000582661 80 ntBASIC2.94□□□□□ -1.94
USP28Q96RU2 AL033523.1-201ENST00000605153 153 ntBASIC2.94□□□□□ -1.94
USP28Q96RU2 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
USP28Q96RU2 AL133173.2-201ENST00000614270 90 ntBASIC2.94□□□□□ -1.94
USP28Q96RU2 AC004696.1-201ENST00000614345 607 ntBASIC2.94□□□□□ -1.94
USP28Q96RU2 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.94□□□□□ -1.94
USP28Q96RU2 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.94□□□□□ -1.94
USP28Q96RU2 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC2.94□□□□□ -1.94
USP28Q96RU2 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
USP28Q96RU2 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.93□□□□□ -1.94
USP28Q96RU2 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC2.93□□□□□ -1.94
USP28Q96RU2 SNORD56.5-201ENST00000364281 72 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 SNORA70.4-201ENST00000365509 134 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 RNU6-637P-201ENST00000384050 107 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 MRPL42P2-201ENST00000403169 426 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 MIR548F1-201ENST00000408667 84 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 RNU6-516P-201ENST00000411381 104 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.93□□□□□ -1.94
USP28Q96RU2 UBE2V1P10-201ENST00000414685 269 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 CCDC58P2-201ENST00000417131 366 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.93□□□□□ -1.94
USP28Q96RU2 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.93□□□□□ -1.94
USP28Q96RU2 AC024082.2-201ENST00000434771 238 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 USP9YP15-201ENST00000442391 422 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 UBBP3-201ENST00000445497 241 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 C1DP4-201ENST00000455429 424 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 RPS3AP17-201ENST00000472594 777 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 RPL23AP41-201ENST00000484754 458 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.93□□□□□ -1.94
USP28Q96RU2 AC108078.1-201ENST00000508073 725 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 AC026801.2-201ENST00000515352 425 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 RNU6-826P-201ENST00000516827 104 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 RNU6-64P-201ENST00000517119 105 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.93□□□□□ -1.94
USP28Q96RU2 HMGB1P41-201ENST00000520234 440 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.93□□□□□ -1.94
USP28Q96RU2 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC2.93□□□□□ -1.94
USP28Q96RU2 AC138761.3-201ENST00000579993 334 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 MIR3670-2-201ENST00000582974 65 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 MIR3670-1-201ENST00000584160 65 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.93□□□□□ -1.94
USP28Q96RU2 MIR3670-3-201ENST00000584855 65 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 MIR98-201ENST00000606724 119 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 MIR3670-4-201ENST00000612260 65 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 uc_338.12-201ENST00000616344 181 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 AC072046.2-201ENST00000618366 268 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 AC068137.3-201ENST00000639191 341 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 AC073869.6-201ENST00000640656 341 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 OR5H6-203ENST00000642105 978 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 AC008568.2-201ENST00000623862 2313 ntBASIC2.93□□□□□ -1.94
USP28Q96RU2 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
USP28Q96RU2 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
USP28Q96RU2 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.92□□□□□ -1.94
USP28Q96RU2 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.92□□□□□ -1.94
USP28Q96RU2 AC009812.4-201ENST00000569134 1805 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 RNU1-39P-201ENST00000383897 165 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 RNU5A-6P-201ENST00000384136 116 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
USP28Q96RU2 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
USP28Q96RU2 RPL19P1-201ENST00000411635 428 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 ELOCP17-201ENST00000414751 326 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 AC080125.1-201ENST00000414888 684 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.92□□□□□ -1.94
USP28Q96RU2 AC090774.1-201ENST00000435925 246 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 AC107083.1-201ENST00000439643 279 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.92□□□□□ -1.94
USP28Q96RU2 AC008571.1-201ENST00000467232 300 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.92□□□□□ -1.94
USP28Q96RU2 RPS3AP14-201ENST00000483907 780 ntBASIC2.92□□□□□ -1.94
USP28Q96RU2 RPS15AP36-201ENST00000492022 382 ntBASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 125.6 ms