Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 U8.8-201ENST00000365399 135 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 Y_RNA.473-201ENST00000384333 102 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 RNU6-1245P-201ENST00000411130 106 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 AC245291.1-201ENST00000419501 328 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 GAS5-208ENST00000425771 242 ntTSL 3 BASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 AL591043.1-201ENST00000432461 424 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 RPL23AP50-201ENST00000434149 455 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 YWHAEP1-201ENST00000453697 763 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 AC103987.1-201ENST00000473394 348 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 AC069499.1-201ENST00000489433 509 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 AC025554.1-201ENST00000505641 188 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 AC010265.1-201ENST00000513509 211 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 RNU6-612P-201ENST00000516909 102 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 AP005902.1-201ENST00000521358 186 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 AP003072.1-201ENST00000531740 145 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 AC006199.1-201ENST00000548728 219 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 AC022404.1-201ENST00000555320 273 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 MIR4273-201ENST00000582824 84 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 MIR4310-201ENST00000582950 57 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 BNIP3P16-201ENST00000589779 534 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 AC020895.1-201ENST00000595362 272 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 AC069307.1-201ENST00000602820 447 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 FO393422.1-201ENST00000603908 708 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 MIR8076-201ENST00000611401 83 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 PLCE1P1-201ENST00000622094 305 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 AC092608.2-201ENST00000624427 218 ntBASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
CLRN3Q8NCR9 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 MIR133B-201ENST00000362210 119 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 RNU6-1059P-201ENST00000363752 98 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 RNU6-842P-201ENST00000384269 107 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 SNORA41-201ENST00000384675 132 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 MIR521-1-201ENST00000384902 87 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 MIR559-201ENST00000385188 96 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 SNORA17A-201ENST00000391185 133 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 AL591034.2-201ENST00000402839 359 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 RNU6-174P-201ENST00000410406 106 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 Z82205.1-201ENST00000428456 297 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 AC006946.1-201ENST00000429106 328 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 RPS15AP5-201ENST00000436276 388 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 AC000111.2-201ENST00000448200 210 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 RPL23AP62-201ENST00000463396 453 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 RPS18P6-201ENST00000476880 458 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 AC090096.1-201ENST00000489168 390 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 AC116655.1-201ENST00000508324 901 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 RNU6-1231P-201ENST00000517185 103 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 AC022634.1-201ENST00000520765 532 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 CR383656.8-201ENST00000549046 145 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 SNRPGP18-201ENST00000553000 214 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 AC020661.2-201ENST00000560114 134 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 AC023575.1-201ENST00000580510 358 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 AC078795.3-201ENST00000602913 472 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 MIR3976-201ENST00000606807 139 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 AC091905.2-201ENST00000623143 306 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 AC138627.2-201ENST00000624202 601 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 SNORA17.5-201ENST00000630429 132 ntBASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CLRN3Q8NCR9 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 RNU6-858P-201ENST00000362436 107 ntBASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 RNA5SP435-201ENST00000364044 108 ntBASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 RNA5SP428-201ENST00000365129 132 ntBASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 Y_RNA.326-201ENST00000365176 113 ntBASIC3.63□□□□□ -1.83
CLRN3Q8NCR9 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms