Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC034102.8-201ENST00000615146 484 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 AC008147.4-201ENST00000617570 1204 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.32□□□□□ -2.04
SKA3Q8IX90 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.32□□□□□ -2.04
SKA3Q8IX90 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.32□□□□□ -2.04
SKA3Q8IX90 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.32□□□□□ -2.04
SKA3Q8IX90 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
SKA3Q8IX90 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.31□□□□□ -2.04
SKA3Q8IX90 UBE2L2-201ENST00000254302 429 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 RNU6-884P-201ENST00000363889 107 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 RNU4-1-201ENST00000363925 141 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 RNU6-512P-201ENST00000364438 103 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 SEPT2P1-201ENST00000419651 180 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 RAC1P6-201ENST00000423911 575 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 AC007283.2-201ENST00000424739 197 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.31□□□□□ -2.04
SKA3Q8IX90 ELOCP14-201ENST00000428070 331 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 AC119618.1-201ENST00000434191 222 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 RPS15AP7-201ENST00000439294 405 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 ELOCP7-201ENST00000439968 331 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 AC009296.1-201ENST00000443146 155 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 CECR9-201ENST00000453421 199 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 RPL26P9-201ENST00000457466 433 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 RNU7-23P-201ENST00000459465 62 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 AP001486.1-201ENST00000463339 476 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 RPL36AP51-201ENST00000487216 318 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 RPS27P26-201ENST00000494583 239 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.31□□□□□ -2.04
SKA3Q8IX90 SUMO2P6-201ENST00000505273 288 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC2.31□□□□□ -2.04
SKA3Q8IX90 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.31□□□□□ -2.04
SKA3Q8IX90 AC022878.1-201ENST00000530684 149 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 EMP1-206ENST00000537612 505 ntTSL 3 BASIC2.31□□□□□ -2.04
SKA3Q8IX90 OSBPL9P5-201ENST00000542581 171 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.31□□□□□ -2.04
SKA3Q8IX90 AC106782.4-201ENST00000568264 210 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.31□□□□□ -2.04
SKA3Q8IX90 AL035413.2-201ENST00000604801 525 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 AC004805.2-201ENST00000605382 482 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.31□□□□□ -2.04
SKA3Q8IX90 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.31□□□□□ -2.04
SKA3Q8IX90 AC107294.1-201ENST00000609524 467 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 AC009878.1-201ENST00000621819 340 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 AC068880.5-201ENST00000624331 290 ntBASIC2.31□□□□□ -2.04
SKA3Q8IX90 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.31□□□□□ -2.04
SKA3Q8IX90 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.31□□□□□ -2.04
SKA3Q8IX90 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
SKA3Q8IX90 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 SNORA5B-201ENST00000363786 132 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 SMIM11P1-201ENST00000369586 178 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 MIR627-201ENST00000384979 97 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
SKA3Q8IX90 U3.26-201ENST00000391236 204 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 MIR888-201ENST00000401186 77 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 Y_RNA.598-201ENST00000410480 95 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC2.3□□□□□ -2.04
SKA3Q8IX90 GTF2IP20-201ENST00000431663 360 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.3□□□□□ -2.04
SKA3Q8IX90 NEFMP1-201ENST00000443423 1006 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 TAF9P1-201ENST00000445421 515 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 AP000936.2-201ENST00000447151 681 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 TAF9P2-201ENST00000454958 515 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 SNRPFP4-201ENST00000456366 242 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.3□□□□□ -2.04
SKA3Q8IX90 BET1P1-201ENST00000482276 359 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 RPS29P20-201ENST00000489592 171 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 RPS27P27-201ENST00000498779 255 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.3□□□□□ -2.04
SKA3Q8IX90 AC010587.1-201ENST00000505809 469 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC2.3□□□□□ -2.04
SKA3Q8IX90 AC118465.1-201ENST00000513820 1271 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 AC119751.5-201ENST00000514077 770 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 AC096725.1-201ENST00000514266 313 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 RNA5SP356-201ENST00000515972 94 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 RNU6-1092P-201ENST00000516955 87 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 RNA5SP165-201ENST00000517142 115 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.3□□□□□ -2.04
SKA3Q8IX90 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.3□□□□□ -2.04
SKA3Q8IX90 AP003467.2-201ENST00000520175 319 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 AC011979.2-201ENST00000527568 352 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.3□□□□□ -2.04
SKA3Q8IX90 RPL21P5-201ENST00000554662 472 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 RPS3AP4-201ENST00000555161 764 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.3□□□□□ -2.04
SKA3Q8IX90 MYL12BP1-201ENST00000569826 507 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 AC008088.1-201ENST00000580993 280 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 AC009977.1-201ENST00000586015 570 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 AL358072.1-201ENST00000604156 575 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 AC007363.1-201ENST00000604736 620 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 AC078883.4-201ENST00000623218 367 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.3□□□□□ -2.04
SKA3Q8IX90 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.3□□□□□ -2.04
SKA3Q8IX90 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.3□□□□□ -2.04
SKA3Q8IX90 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
SKA3Q8IX90 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.3□□□□□ -2.04
SKA3Q8IX90 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.3□□□□□ -2.04
SKA3Q8IX90 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.3□□□□□ -2.04
SKA3Q8IX90 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
SKA3Q8IX90 AC135776.4-201ENST00000624300 1904 ntBASIC2.29□□□□□ -2.04
SKA3Q8IX90 MTND5P29-201ENST00000458676 1807 ntBASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 220.6 ms