Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC012005.1-201ENST00000624575 75 ntBASIC0.39□□□□□ -2.35
LINC00643Q86TS7 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
LINC00643Q86TS7 MIR302D-201ENST00000362275 68 ntBASIC0.38□□□□□ -2.35
LINC00643Q86TS7 SNORA80A-201ENST00000363922 136 ntBASIC0.38□□□□□ -2.35
LINC00643Q86TS7 RNA5SP190-201ENST00000365222 118 ntBASIC0.38□□□□□ -2.35
LINC00643Q86TS7 RNU1-57P-201ENST00000384491 166 ntBASIC0.38□□□□□ -2.35
LINC00643Q86TS7 U8.13-201ENST00000390842 128 ntBASIC0.38□□□□□ -2.35
LINC00643Q86TS7 RNA5SP100-201ENST00000410903 110 ntBASIC0.38□□□□□ -2.35
LINC00643Q86TS7 RNA5SP59-201ENST00000410922 110 ntBASIC0.38□□□□□ -2.35
LINC00643Q86TS7 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC0.38□□□□□ -2.35
LINC00643Q86TS7 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC0.38□□□□□ -2.35
LINC00643Q86TS7 TRIM60P13-201ENST00000432350 1283 ntBASIC0.38□□□□□ -2.35
LINC00643Q86TS7 AC027119.1-201ENST00000440877 241 ntBASIC0.38□□□□□ -2.35
LINC00643Q86TS7 HMGN2P18-201ENST00000450680 270 ntBASIC0.38□□□□□ -2.35
LINC00643Q86TS7 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC0.38□□□□□ -2.35
LINC00643Q86TS7 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC0.38□□□□□ -2.35
LINC00643Q86TS7 SNORA48.11-201ENST00000517015 89 ntBASIC0.38□□□□□ -2.35
LINC00643Q86TS7 5S_rRNA.3-201ENST00000517021 110 ntBASIC0.38□□□□□ -2.35
LINC00643Q86TS7 SULT1C2P1-202ENST00000562418 459 ntBASIC0.38□□□□□ -2.35
LINC00643Q86TS7 LARP7P3-201ENST00000579888 337 ntBASIC0.38□□□□□ -2.35
LINC00643Q86TS7 AC008088.1-201ENST00000580993 280 ntBASIC0.38□□□□□ -2.35
LINC00643Q86TS7 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC0.38□□□□□ -2.35
LINC00643Q86TS7 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC0.38□□□□□ -2.35
LINC00643Q86TS7 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC0.38□□□□□ -2.35
LINC00643Q86TS7 WISP1-OT1-201ENST00000602893 642 ntBASIC0.38□□□□□ -2.35
LINC00643Q86TS7 5S_rRNA.19-201ENST00000612131 110 ntBASIC0.38□□□□□ -2.35
LINC00643Q86TS7 UBE2Q2P6-201ENST00000612666 153 ntBASIC0.38□□□□□ -2.35
LINC00643Q86TS7 uc_338.14-201ENST00000613162 166 ntBASIC0.38□□□□□ -2.35
LINC00643Q86TS7 AC018926.3-201ENST00000618841 406 ntBASIC0.38□□□□□ -2.35
LINC00643Q86TS7 5S_rRNA.18-201ENST00000621941 110 ntBASIC0.38□□□□□ -2.35
LINC00643Q86TS7 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC0.38□□□□□ -2.35
LINC00643Q86TS7 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
LINC00643Q86TS7 ATP8A2P2-201ENST00000437678 1568 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 SNORA56-201ENST00000383966 129 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 RPL23AP29-201ENST00000397284 453 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 AL355615.1-201ENST00000406187 641 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 RN7SKP192-201ENST00000411291 327 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 RPS12P24-201ENST00000412619 387 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 Z82210.1-201ENST00000440037 231 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 HSPE1P13-201ENST00000451143 297 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 RPL23AP23-201ENST00000452590 471 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC0.37□□□□□ -2.35
LINC00643Q86TS7 AC018437.1-201ENST00000492214 406 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC0.37□□□□□ -2.35
LINC00643Q86TS7 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC0.37□□□□□ -2.35
LINC00643Q86TS7 RNU6-27P-201ENST00000516146 107 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 SNORA67.7-201ENST00000516664 135 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 NRON-201ENST00000517270 370 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC0.37□□□□□ -2.35
LINC00643Q86TS7 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.37□□□□□ -2.35
LINC00643Q86TS7 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC0.37□□□□□ -2.35
LINC00643Q86TS7 AC124947.2-202ENST00000552735 133 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 DNAJC19P9-201ENST00000555084 351 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 CYP3A52P-201ENST00000563326 91 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 MIR4513-201ENST00000581077 86 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 MIR3162-201ENST00000581818 82 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 AL713866.2-201ENST00000603579 219 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 AC098826.3-201ENST00000603823 466 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 BNIP3P10-201ENST00000605360 577 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC0.37□□□□□ -2.35
LINC00643Q86TS7 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC0.37□□□□□ -2.35
LINC00643Q86TS7 MIR8063-201ENST00000621930 81 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 AC027335.2-201ENST00000624030 375 ntBASIC0.37□□□□□ -2.35
LINC00643Q86TS7 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC0.37□□□□□ -2.35
LINC00643Q86TS7 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.37□□□□□ -2.35
LINC00643Q86TS7 RNU6-884P-201ENST00000363889 107 ntBASIC0.36□□□□□ -2.35
LINC00643Q86TS7 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC0.36□□□□□ -2.35
LINC00643Q86TS7 AL035666.1-201ENST00000446195 348 ntBASIC0.36□□□□□ -2.35
LINC00643Q86TS7 AL157398.1-201ENST00000452981 186 ntBASIC0.36□□□□□ -2.35
LINC00643Q86TS7 KATNBL1P6-201ENST00000453433 915 ntBASIC0.36□□□□□ -2.35
LINC00643Q86TS7 TRBV1-201ENST00000476502 284 ntBASIC0.36□□□□□ -2.35
LINC00643Q86TS7 AC108729.1-201ENST00000487812 947 ntBASIC0.36□□□□□ -2.35
LINC00643Q86TS7 AC117454.1-201ENST00000491120 168 ntBASIC0.36□□□□□ -2.35
LINC00643Q86TS7 AC006390.1-201ENST00000508068 283 ntBASIC0.36□□□□□ -2.35
LINC00643Q86TS7 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC0.36□□□□□ -2.35
LINC00643Q86TS7 AC016550.3-201ENST00000515706 767 ntBASIC0.36□□□□□ -2.35
LINC00643Q86TS7 RNU6-1256P-201ENST00000516539 103 ntBASIC0.36□□□□□ -2.35
LINC00643Q86TS7 RNU6-197P-201ENST00000516680 100 ntBASIC0.36□□□□□ -2.35
LINC00643Q86TS7 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC0.36□□□□□ -2.35
LINC00643Q86TS7 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC0.36□□□□□ -2.35
LINC00643Q86TS7 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC0.36□□□□□ -2.35
LINC00643Q86TS7 SNORA77B-201ENST00000578179 125 ntBASIC0.36□□□□□ -2.35
LINC00643Q86TS7 MTCO2P2-201ENST00000591258 225 ntBASIC0.36□□□□□ -2.35
LINC00643Q86TS7 CYP2C61P-201ENST00000604072 290 ntBASIC0.36□□□□□ -2.35
LINC00643Q86TS7 AC087045.1-201ENST00000605856 382 ntBASIC0.36□□□□□ -2.35
LINC00643Q86TS7 AL022345.2-201ENST00000606307 135 ntBASIC0.36□□□□□ -2.35
LINC00643Q86TS7 MIR6857-201ENST00000613267 93 ntBASIC0.36□□□□□ -2.35
LINC00643Q86TS7 AC068722.2-201ENST00000618734 544 ntBASIC0.36□□□□□ -2.35
LINC00643Q86TS7 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC0.36□□□□□ -2.35
LINC00643Q86TS7 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.36□□□□□ -2.35
LINC00643Q86TS7 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC0.35□□□□□ -2.35
LINC00643Q86TS7 RNU1-23P-201ENST00000363361 144 ntBASIC0.35□□□□□ -2.35
LINC00643Q86TS7 MIR888-201ENST00000401186 77 ntBASIC0.35□□□□□ -2.35
LINC00643Q86TS7 MIR1267-201ENST00000408723 78 ntBASIC0.35□□□□□ -2.35
LINC00643Q86TS7 BPY2DP-201ENST00000422208 265 ntBASIC0.35□□□□□ -2.35
LINC00643Q86TS7 AC139712.2-201ENST00000424302 339 ntBASIC0.35□□□□□ -2.35
LINC00643Q86TS7 RPL26P6-201ENST00000440913 438 ntBASIC0.35□□□□□ -2.35
LINC00643Q86TS7 AC087477.1-201ENST00000465747 340 ntBASIC0.35□□□□□ -2.35
LINC00643Q86TS7 BET1P1-201ENST00000482276 359 ntBASIC0.35□□□□□ -2.35
LINC00643Q86TS7 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC0.35□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms