Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 MIR4529-201ENST00000578110 78 ntBASIC0.46□□□□□ -2.34
COL7A1Q02388 AC090616.3-201ENST00000582184 217 ntBASIC0.46□□□□□ -2.34
COL7A1Q02388 AC078899.2-201ENST00000595282 212 ntBASIC0.46□□□□□ -2.34
COL7A1Q02388 CYP2C61P-201ENST00000604072 290 ntBASIC0.46□□□□□ -2.34
COL7A1Q02388 UBE2Q2P1-202ENST00000354771 883 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 Y_RNA.288-201ENST00000364854 92 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 Y_RNA.453-201ENST00000384223 109 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC0.45□□□□□ -2.34
COL7A1Q02388 AL356432.1-201ENST00000405809 419 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC0.45□□□□□ -2.34
COL7A1Q02388 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC0.45□□□□□ -2.34
COL7A1Q02388 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC0.45□□□□□ -2.34
COL7A1Q02388 RPS27P26-201ENST00000494583 239 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 MTCYBP41-201ENST00000528913 1123 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 MTCYBP23-201ENST00000558717 1102 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 MIR3616-201ENST00000584070 92 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC0.45□□□□□ -2.34
COL7A1Q02388 AC010620.1-201ENST00000601088 1102 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 AC240442.1-201ENST00000616055 283 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 AC010809.3-201ENST00000621310 641 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 AC109454.4-201ENST00000623411 649 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 AC145207.9-201ENST00000623802 325 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 SNORA63.3-201ENST00000362682 132 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 Y_RNA.413-201ENST00000384007 102 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 SNORD26-201ENST00000384147 75 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC0.45□□□□□ -2.34
COL7A1Q02388 Y_RNA.754-201ENST00000476024 102 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC0.45□□□□□ -2.34
COL7A1Q02388 AC105914.1-201ENST00000511798 226 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC0.45□□□□□ -2.34
COL7A1Q02388 OR5B19P-201ENST00000531766 928 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 OR5AL2P-201ENST00000532185 920 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC0.45□□□□□ -2.34
COL7A1Q02388 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC0.45□□□□□ -2.34
COL7A1Q02388 AC245128.3-201ENST00000594721 748 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC0.45□□□□□ -2.34
COL7A1Q02388 Y_RNA.790-201ENST00000614282 102 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 Y_RNA.782-201ENST00000614695 102 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 Y_RNA.804-201ENST00000615262 101 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 AL356473.1-201ENST00000406203 1408 ntBASIC0.45□□□□□ -2.34
COL7A1Q02388 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC0.45□□□□□ -2.34
COL7A1Q02388 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC0.45□□□□□ -2.34
COL7A1Q02388 RNA5SP118-201ENST00000410385 109 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 MTCO1P23-201ENST00000415223 1526 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 RPL7P30-201ENST00000420888 709 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
COL7A1Q02388 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.44□□□□□ -2.34
COL7A1Q02388 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC0.44□□□□□ -2.34
COL7A1Q02388 KLF3P2-201ENST00000465138 268 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 TPT1P8-201ENST00000510120 555 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 SNORA31.18-201ENST00000517043 134 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
COL7A1Q02388 AC087272.1-201ENST00000523624 533 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 OR10V3P-201ENST00000525712 725 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 MIR4514-201ENST00000581410 57 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 AL109918.3-201ENST00000603072 338 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC0.44□□□□□ -2.34
COL7A1Q02388 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
COL7A1Q02388 RNU6-19P-201ENST00000384718 107 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 AC244098.2-201ENST00000422068 99 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 snoU13.11-201ENST00000459219 104 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 RNA5SP57-201ENST00000459463 123 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC0.44□□□□□ -2.34
COL7A1Q02388 AL160236.1-201ENST00000556317 195 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC0.44□□□□□ -2.34
COL7A1Q02388 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC0.44□□□□□ -2.34
COL7A1Q02388 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC0.44□□□□□ -2.34
COL7A1Q02388 RNU1-72P-201ENST00000362976 153 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 SNORD95.1-201ENST00000364099 68 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC0.44□□□□□ -2.34
COL7A1Q02388 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC0.44□□□□□ -2.34
COL7A1Q02388 AC087588.1-201ENST00000462203 316 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 AC098862.1-201ENST00000504991 413 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 PCNAP1-201ENST00000505363 709 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 SNORA31.25-201ENST00000517242 134 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 ERHP1-201ENST00000523006 310 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 AC004812.1-201ENST00000540773 146 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC0.44□□□□□ -2.34
COL7A1Q02388 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC0.44□□□□□ -2.34
COL7A1Q02388 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC0.44□□□□□ -2.34
COL7A1Q02388 CENPUP2-201ENST00000555897 1186 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 AC008751.2-201ENST00000597885 980 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 AC009974.1-201ENST00000608881 455 ntBASIC0.44□□□□□ -2.34
COL7A1Q02388 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC0.43□□□□□ -2.34
COL7A1Q02388 AC121333.1-201ENST00000567488 2709 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 AP002784.2-201ENST00000397300 549 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC0.43□□□□□ -2.34
COL7A1Q02388 SFR1P2-201ENST00000421841 730 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 TOMM22P2-201ENST00000430735 237 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 RPL23AP33-201ENST00000442301 452 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 AC117454.1-201ENST00000491120 168 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC0.43□□□□□ -2.34
COL7A1Q02388 SNORA3.4-201ENST00000515969 96 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 AP005902.1-201ENST00000521358 186 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC0.43□□□□□ -2.34
COL7A1Q02388 AC023824.2-201ENST00000566185 400 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC0.43□□□□□ -2.34
COL7A1Q02388 AC087045.1-201ENST00000605856 382 ntBASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms