Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC068137.4-201ENST00000638485 296 ntBASIC3.48□□□□□ -1.85
CTCFP49711 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CTCFP49711 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.48□□□□□ -1.85
CTCFP49711 SNORD56.3-201ENST00000363507 71 ntBASIC3.47□□□□□ -1.85
CTCFP49711 Y_RNA.559-201ENST00000384686 107 ntBASIC3.47□□□□□ -1.85
CTCFP49711 SNORD67-201ENST00000390833 111 ntBASIC3.47□□□□□ -1.85
CTCFP49711 RNU6-1197P-201ENST00000391183 107 ntBASIC3.47□□□□□ -1.85
CTCFP49711 RNA5SP229-201ENST00000410809 99 ntBASIC3.47□□□□□ -1.85
CTCFP49711 AL663109.1-201ENST00000411498 844 ntBASIC3.47□□□□□ -1.85
CTCFP49711 AL513331.1-201ENST00000411908 397 ntBASIC3.47□□□□□ -1.85
CTCFP49711 Z85995.1-201ENST00000415547 335 ntBASIC3.47□□□□□ -1.85
CTCFP49711 MTND3P17-201ENST00000416968 344 ntBASIC3.47□□□□□ -1.85
CTCFP49711 SDCBPP3-201ENST00000419629 891 ntBASIC3.47□□□□□ -1.85
CTCFP49711 RPS24P1-201ENST00000438550 371 ntBASIC3.47□□□□□ -1.85
CTCFP49711 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC3.47□□□□□ -1.85
CTCFP49711 AC104472.2-201ENST00000469035 601 ntBASIC3.47□□□□□ -1.85
CTCFP49711 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.47□□□□□ -1.85
CTCFP49711 RNU6-1220P-201ENST00000517126 108 ntBASIC3.47□□□□□ -1.85
CTCFP49711 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.47□□□□□ -1.85
CTCFP49711 CASP1P1-201ENST00000526345 212 ntBASIC3.47□□□□□ -1.85
CTCFP49711 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.47□□□□□ -1.85
CTCFP49711 AC107016.2-201ENST00000547968 190 ntBASIC3.47□□□□□ -1.85
CTCFP49711 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.47□□□□□ -1.85
CTCFP49711 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC3.47□□□□□ -1.85
CTCFP49711 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.47□□□□□ -1.85
CTCFP49711 AC087683.1-201ENST00000591187 441 ntBASIC3.47□□□□□ -1.85
CTCFP49711 MIR6817-201ENST00000615588 66 ntBASIC3.47□□□□□ -1.85
CTCFP49711 AL353997.5-201ENST00000618886 171 ntBASIC3.47□□□□□ -1.85
CTCFP49711 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CTCFP49711 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CTCFP49711 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
CTCFP49711 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.46□□□□□ -1.85
CTCFP49711 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
CTCFP49711 TPTE2P4-201ENST00000258589 1605 ntBASIC3.46□□□□□ -1.86
CTCFP49711 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
CTCFP49711 RNU6-859P-201ENST00000362728 107 ntBASIC3.46□□□□□ -1.86
CTCFP49711 RNA5SP68-201ENST00000363885 119 ntBASIC3.46□□□□□ -1.86
CTCFP49711 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CTCFP49711 OR5H15-201ENST00000383696 930 ntBASIC3.46□□□□□ -1.86
CTCFP49711 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CTCFP49711 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.46□□□□□ -1.86
CTCFP49711 AC127391.1-201ENST00000411737 98 ntBASIC3.46□□□□□ -1.86
CTCFP49711 ELOCP4-201ENST00000420090 333 ntBASIC3.46□□□□□ -1.86
CTCFP49711 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC3.46□□□□□ -1.86
CTCFP49711 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.46□□□□□ -1.86
CTCFP49711 DLGAP5P1-201ENST00000430307 464 ntBASIC3.46□□□□□ -1.86
CTCFP49711 RPL31P35-201ENST00000431058 377 ntBASIC3.46□□□□□ -1.86
CTCFP49711 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.46□□□□□ -1.86
CTCFP49711 SNRPGP6-201ENST00000451124 220 ntBASIC3.46□□□□□ -1.86
CTCFP49711 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.46□□□□□ -1.86
CTCFP49711 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.46□□□□□ -1.86
CTCFP49711 CKS1BP2-201ENST00000497342 240 ntBASIC3.46□□□□□ -1.86
CTCFP49711 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.46□□□□□ -1.86
CTCFP49711 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC3.46□□□□□ -1.86
CTCFP49711 AC006445.2-201ENST00000510061 472 ntBASIC3.46□□□□□ -1.86
CTCFP49711 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC3.46□□□□□ -1.86
CTCFP49711 Vault.3-201ENST00000516676 95 ntBASIC3.46□□□□□ -1.86
CTCFP49711 RNU6-430P-201ENST00000517078 107 ntBASIC3.46□□□□□ -1.86
CTCFP49711 RN7SKP258-201ENST00000517151 304 ntBASIC3.46□□□□□ -1.86
CTCFP49711 AC011979.2-201ENST00000527568 352 ntBASIC3.46□□□□□ -1.86
CTCFP49711 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.46□□□□□ -1.86
CTCFP49711 AGGF1P4-201ENST00000568249 801 ntBASIC3.46□□□□□ -1.86
CTCFP49711 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.46□□□□□ -1.86
CTCFP49711 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC3.46□□□□□ -1.86
CTCFP49711 AL161729.4-201ENST00000604650 476 ntBASIC3.46□□□□□ -1.86
CTCFP49711 AC008498.1-201ENST00000613012 531 ntBASIC3.46□□□□□ -1.86
CTCFP49711 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.46□□□□□ -1.86
CTCFP49711 AL133173.2-201ENST00000614270 90 ntBASIC3.46□□□□□ -1.86
CTCFP49711 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CTCFP49711 CR848007.1-201ENST00000442354 1699 ntBASIC3.46□□□□□ -1.86
CTCFP49711 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
CTCFP49711 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.45□□□□□ -1.86
CTCFP49711 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC3.45□□□□□ -1.86
CTCFP49711 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.45□□□□□ -1.86
CTCFP49711 HSPE1P11-201ENST00000339579 310 ntBASIC3.45□□□□□ -1.86
CTCFP49711 SNORD56.2-201ENST00000363242 71 ntBASIC3.45□□□□□ -1.86
CTCFP49711 RNU4-75P-201ENST00000364621 146 ntBASIC3.45□□□□□ -1.86
CTCFP49711 RNU5E-6P-201ENST00000365574 115 ntBASIC3.45□□□□□ -1.86
CTCFP49711 SNORA20.2-201ENST00000383922 131 ntBASIC3.45□□□□□ -1.86
CTCFP49711 RNU6-39P-201ENST00000384344 107 ntBASIC3.45□□□□□ -1.86
CTCFP49711 Y_RNA.508-201ENST00000384502 114 ntBASIC3.45□□□□□ -1.86
CTCFP49711 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.45□□□□□ -1.86
CTCFP49711 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.45□□□□□ -1.86
CTCFP49711 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC3.45□□□□□ -1.86
CTCFP49711 BX295541.1-201ENST00000417774 250 ntBASIC3.45□□□□□ -1.86
CTCFP49711 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.45□□□□□ -1.86
CTCFP49711 AC137499.1-201ENST00000427602 88 ntBASIC3.45□□□□□ -1.86
CTCFP49711 AL590383.1-201ENST00000428602 75 ntBASIC3.45□□□□□ -1.86
CTCFP49711 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CTCFP49711 AL589823.1-201ENST00000429577 183 ntBASIC3.45□□□□□ -1.86
CTCFP49711 USP9YP14-201ENST00000430663 563 ntBASIC3.45□□□□□ -1.86
CTCFP49711 MTCO3P5-201ENST00000433620 714 ntBASIC3.45□□□□□ -1.86
CTCFP49711 AL513043.1-201ENST00000439124 535 ntBASIC3.45□□□□□ -1.86
CTCFP49711 AC009237.8-201ENST00000445492 379 ntBASIC3.45□□□□□ -1.86
CTCFP49711 CBWD4P-201ENST00000445695 655 ntBASIC3.45□□□□□ -1.86
CTCFP49711 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.45□□□□□ -1.86
CTCFP49711 AC079448.1-201ENST00000449377 373 ntBASIC3.45□□□□□ -1.86
CTCFP49711 TPTE2P5-203ENST00000458118 728 ntBASIC3.45□□□□□ -1.86
CTCFP49711 SNORD97-201ENST00000459187 142 ntBASIC3.45□□□□□ -1.86
CTCFP49711 AC117440.1-201ENST00000474107 571 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms