Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.75□□□□□ -1.97
SOX3P41225 MTND1P1-201ENST00000445453 368 ntBASIC2.75□□□□□ -1.97
SOX3P41225 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.75□□□□□ -1.97
SOX3P41225 RPL9P6-201ENST00000492764 598 ntBASIC2.75□□□□□ -1.97
SOX3P41225 AC117522.1-201ENST00000509821 380 ntBASIC2.75□□□□□ -1.97
SOX3P41225 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.75□□□□□ -1.97
SOX3P41225 RNA5SP76-201ENST00000516277 87 ntBASIC2.75□□□□□ -1.97
SOX3P41225 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.75□□□□□ -1.97
SOX3P41225 MTCYBP20-201ENST00000524239 1129 ntBASIC2.75□□□□□ -1.97
SOX3P41225 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.75□□□□□ -1.97
SOX3P41225 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.75□□□□□ -1.97
SOX3P41225 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
SOX3P41225 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC2.75□□□□□ -1.97
SOX3P41225 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.75□□□□□ -1.97
SOX3P41225 TRAV28-201ENST00000557548 323 ntBASIC2.75□□□□□ -1.97
SOX3P41225 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC2.75□□□□□ -1.97
SOX3P41225 AC068790.6-201ENST00000602558 258 ntBASIC2.75□□□□□ -1.97
SOX3P41225 AL121992.2-201ENST00000606262 256 ntBASIC2.75□□□□□ -1.97
SOX3P41225 AC007684.1-201ENST00000609671 477 ntBASIC2.75□□□□□ -1.97
SOX3P41225 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.75□□□□□ -1.97
SOX3P41225 AC073534.2-201ENST00000620377 381 ntBASIC2.75□□□□□ -1.97
SOX3P41225 AC006386.2-201ENST00000624491 75 ntBASIC2.75□□□□□ -1.97
SOX3P41225 AC012005.1-201ENST00000624575 75 ntBASIC2.75□□□□□ -1.97
SOX3P41225 AC124864.2-201ENST00000624736 186 ntBASIC2.75□□□□□ -1.97
SOX3P41225 AC099654.12-201ENST00000639868 649 ntBASIC2.75□□□□□ -1.97
SOX3P41225 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.75□□□□□ -1.97
SOX3P41225 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.75□□□□□ -1.97
SOX3P41225 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.75□□□□□ -1.97
SOX3P41225 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
SOX3P41225 AL049641.1-201ENST00000441055 1948 ntBASIC2.74□□□□□ -1.97
SOX3P41225 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.74□□□□□ -1.97
SOX3P41225 Y_RNA.159-201ENST00000363674 87 ntBASIC2.74□□□□□ -1.97
SOX3P41225 MIR1-2-201ENST00000384961 85 ntBASIC2.74□□□□□ -1.97
SOX3P41225 RNU6-817P-201ENST00000391083 104 ntBASIC2.74□□□□□ -1.97
SOX3P41225 RNU1-101P-201ENST00000391171 127 ntBASIC2.74□□□□□ -1.97
SOX3P41225 RNU2-33P-201ENST00000410344 192 ntBASIC2.74□□□□□ -1.97
SOX3P41225 EEF1A1P41-201ENST00000414667 207 ntBASIC2.74□□□□□ -1.97
SOX3P41225 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
SOX3P41225 MTCO2P19-201ENST00000427513 598 ntBASIC2.74□□□□□ -1.97
SOX3P41225 AC073464.1-201ENST00000429823 534 ntBASIC2.74□□□□□ -1.97
SOX3P41225 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC2.74□□□□□ -1.97
SOX3P41225 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.74□□□□□ -1.97
SOX3P41225 BNIP3P2-201ENST00000441221 577 ntBASIC2.74□□□□□ -1.97
SOX3P41225 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.74□□□□□ -1.97
SOX3P41225 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.74□□□□□ -1.97
SOX3P41225 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.74□□□□□ -1.97
SOX3P41225 AC022364.2-201ENST00000457963 554 ntBASIC2.74□□□□□ -1.97
SOX3P41225 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.74□□□□□ -1.97
SOX3P41225 AL160314.1-201ENST00000490836 438 ntBASIC2.74□□□□□ -1.97
SOX3P41225 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.74□□□□□ -1.97
SOX3P41225 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.74□□□□□ -1.97
SOX3P41225 OR5B19P-201ENST00000531766 928 ntBASIC2.74□□□□□ -1.97
SOX3P41225 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.74□□□□□ -1.97
SOX3P41225 EIF4BP1-201ENST00000554881 351 ntBASIC2.74□□□□□ -1.97
SOX3P41225 SUB1P2-201ENST00000556401 297 ntBASIC2.74□□□□□ -1.97
SOX3P41225 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.74□□□□□ -1.97
SOX3P41225 AC024619.4-201ENST00000580924 316 ntBASIC2.74□□□□□ -1.97
SOX3P41225 AL391646.1-201ENST00000603860 190 ntBASIC2.74□□□□□ -1.97
SOX3P41225 Z84480.1-201ENST00000605131 311 ntBASIC2.74□□□□□ -1.97
SOX3P41225 AC069234.5-201ENST00000611056 416 ntBASIC2.74□□□□□ -1.97
SOX3P41225 AC013562.2-201ENST00000611632 603 ntBASIC2.74□□□□□ -1.97
SOX3P41225 MIR6076-201ENST00000617521 113 ntBASIC2.74□□□□□ -1.97
SOX3P41225 AL158209.2-201ENST00000619266 216 ntBASIC2.74□□□□□ -1.97
SOX3P41225 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
SOX3P41225 AL137790.1-201ENST00000634283 177 ntBASIC2.74□□□□□ -1.97
SOX3P41225 MIR6733-201ENST00000635723 61 ntBASIC2.74□□□□□ -1.97
SOX3P41225 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.74□□□□□ -1.97
SOX3P41225 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
SOX3P41225 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.74□□□□□ -1.97
SOX3P41225 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
SOX3P41225 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
SOX3P41225 ASNSP3-201ENST00000451989 1306 ntBASIC2.73□□□□□ -1.97
SOX3P41225 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.73□□□□□ -1.97
SOX3P41225 TPTE2P4-201ENST00000258589 1605 ntBASIC2.73□□□□□ -1.97
SOX3P41225 Y_RNA.1-201ENST00000352915 104 ntBASIC2.73□□□□□ -1.97
SOX3P41225 RNU6-1167P-201ENST00000363227 94 ntBASIC2.73□□□□□ -1.97
SOX3P41225 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
SOX3P41225 RNU6-641P-201ENST00000384006 107 ntBASIC2.73□□□□□ -1.97
SOX3P41225 MIR325-201ENST00000385260 98 ntBASIC2.73□□□□□ -1.97
SOX3P41225 RNU6-192P-201ENST00000391253 100 ntBASIC2.73□□□□□ -1.97
SOX3P41225 RPS4XP3-201ENST00000398541 413 ntBASIC2.73□□□□□ -1.97
SOX3P41225 AL354719.1-201ENST00000406535 843 ntBASIC2.73□□□□□ -1.97
SOX3P41225 AL451074.5-201ENST00000415894 435 ntBASIC2.73□□□□□ -1.97
SOX3P41225 MTATP6P18-201ENST00000417994 673 ntBASIC2.73□□□□□ -1.97
SOX3P41225 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.73□□□□□ -1.97
SOX3P41225 COTL1P1-201ENST00000422309 375 ntBASIC2.73□□□□□ -1.97
SOX3P41225 HMGB1P27-201ENST00000431429 603 ntBASIC2.73□□□□□ -1.97
SOX3P41225 AC002486.1-201ENST00000435098 391 ntBASIC2.73□□□□□ -1.97
SOX3P41225 Z82210.1-201ENST00000440037 231 ntBASIC2.73□□□□□ -1.97
SOX3P41225 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
SOX3P41225 AL590664.1-201ENST00000448065 339 ntBASIC2.73□□□□□ -1.97
SOX3P41225 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.73□□□□□ -1.97
SOX3P41225 RNU6-953P-201ENST00000459154 107 ntBASIC2.73□□□□□ -1.97
SOX3P41225 RPS29P26-201ENST00000477483 171 ntBASIC2.73□□□□□ -1.97
SOX3P41225 KC877373.1-201ENST00000479066 408 ntBASIC2.73□□□□□ -1.97
SOX3P41225 AL135752.1-201ENST00000479477 471 ntBASIC2.73□□□□□ -1.97
SOX3P41225 AC116562.3-201ENST00000506136 177 ntBASIC2.73□□□□□ -1.97
SOX3P41225 SNORD27.1-201ENST00000516319 72 ntBASIC2.73□□□□□ -1.97
SOX3P41225 RNA5SP291-201ENST00000517222 105 ntBASIC2.73□□□□□ -1.97
SOX3P41225 AC068587.5-201ENST00000528506 175 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms