Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RNU6-140P-201ENST00000384566 108 ntBASIC2.1□□□□□ -2.07
BRCA1P38398 RN7SKP101-201ENST00000411376 320 ntBASIC2.1□□□□□ -2.07
BRCA1P38398 WARS2P1-201ENST00000429678 537 ntBASIC2.1□□□□□ -2.07
BRCA1P38398 USP12PX-201ENST00000432383 1057 ntBASIC2.1□□□□□ -2.07
BRCA1P38398 AL445687.1-201ENST00000439946 251 ntBASIC2.1□□□□□ -2.07
BRCA1P38398 MTND5P14-201ENST00000441481 1267 ntBASIC2.1□□□□□ -2.07
BRCA1P38398 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.1□□□□□ -2.07
BRCA1P38398 RNU6-717P-201ENST00000459076 104 ntBASIC2.1□□□□□ -2.07
BRCA1P38398 MTND1P16-201ENST00000465177 898 ntBASIC2.1□□□□□ -2.07
BRCA1P38398 AL121594.1-201ENST00000475906 575 ntBASIC2.1□□□□□ -2.07
BRCA1P38398 RNA5SP102-201ENST00000516865 106 ntBASIC2.1□□□□□ -2.07
BRCA1P38398 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC2.1□□□□□ -2.07
BRCA1P38398 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.1□□□□□ -2.07
BRCA1P38398 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC2.1□□□□□ -2.07
BRCA1P38398 TRAV28-201ENST00000557548 323 ntBASIC2.1□□□□□ -2.07
BRCA1P38398 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC2.1□□□□□ -2.07
BRCA1P38398 ABBA01006766.1-201ENST00000584728 294 ntBASIC2.1□□□□□ -2.07
BRCA1P38398 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.1□□□□□ -2.07
BRCA1P38398 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC2.1□□□□□ -2.07
BRCA1P38398 AL138713.1-201ENST00000624026 2130 ntBASIC2.1□□□□□ -2.07
BRCA1P38398 AP003399.1-201ENST00000637534 361 ntBASIC2.1□□□□□ -2.07
BRCA1P38398 AL590084.2-201ENST00000401481 382 ntBASIC2.09□□□□□ -2.07
BRCA1P38398 BX682237.1-201ENST00000415016 335 ntBASIC2.09□□□□□ -2.07
BRCA1P38398 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC2.09□□□□□ -2.07
BRCA1P38398 RPS4XP11-201ENST00000446897 772 ntBASIC2.09□□□□□ -2.07
BRCA1P38398 PAXBP1P1-201ENST00000449315 447 ntBASIC2.09□□□□□ -2.07
BRCA1P38398 AC005297.2-201ENST00000450430 606 ntBASIC2.09□□□□□ -2.07
BRCA1P38398 ZNF886P-201ENST00000450781 723 ntBASIC2.09□□□□□ -2.07
BRCA1P38398 USP9YP10-201ENST00000454868 628 ntBASIC2.09□□□□□ -2.07
BRCA1P38398 AL109741.2-201ENST00000455561 343 ntBASIC2.09□□□□□ -2.07
BRCA1P38398 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC2.09□□□□□ -2.07
BRCA1P38398 AC113347.3-201ENST00000509113 148 ntBASIC2.09□□□□□ -2.07
BRCA1P38398 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.09□□□□□ -2.07
BRCA1P38398 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.09□□□□□ -2.07
BRCA1P38398 AC118942.1-201ENST00000529674 1035 ntBASIC2.09□□□□□ -2.07
BRCA1P38398 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC2.09□□□□□ -2.07
BRCA1P38398 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.09□□□□□ -2.07
BRCA1P38398 AC011939.3-201ENST00000613686 466 ntBASIC2.09□□□□□ -2.07
BRCA1P38398 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
BRCA1P38398 AC008443.7-201ENST00000622195 246 ntBASIC2.09□□□□□ -2.07
BRCA1P38398 CKAP2P1-201ENST00000555477 2049 ntBASIC2.09□□□□□ -2.07
BRCA1P38398 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.08
BRCA1P38398 Y_RNA.578-201ENST00000390903 88 ntBASIC2.09□□□□□ -2.08
BRCA1P38398 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.09□□□□□ -2.08
BRCA1P38398 AL136310.1-201ENST00000404926 654 ntBASIC2.09□□□□□ -2.08
BRCA1P38398 POLHP1-201ENST00000411806 470 ntBASIC2.09□□□□□ -2.08
BRCA1P38398 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC2.09□□□□□ -2.08
BRCA1P38398 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.09□□□□□ -2.08
BRCA1P38398 AL645568.3-201ENST00000433683 316 ntBASIC2.09□□□□□ -2.08
BRCA1P38398 OR10R1P-201ENST00000441524 1141 ntBASIC2.09□□□□□ -2.08
BRCA1P38398 USP9YP15-201ENST00000442391 422 ntBASIC2.09□□□□□ -2.08
BRCA1P38398 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC2.09□□□□□ -2.08
BRCA1P38398 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC2.09□□□□□ -2.08
BRCA1P38398 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC2.09□□□□□ -2.08
BRCA1P38398 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.09□□□□□ -2.08
BRCA1P38398 OR6C7P-201ENST00000547875 934 ntBASIC2.09□□□□□ -2.08
BRCA1P38398 MIR4446-201ENST00000578505 67 ntBASIC2.09□□□□□ -2.08
BRCA1P38398 AC007349.4-201ENST00000608114 532 ntBASIC2.09□□□□□ -2.08
BRCA1P38398 AL161734.1-201ENST00000609720 557 ntBASIC2.09□□□□□ -2.08
BRCA1P38398 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.09□□□□□ -2.08
BRCA1P38398 PCMTD1P7-201ENST00000634506 357 ntBASIC2.09□□□□□ -2.08
BRCA1P38398 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.09□□□□□ -2.08
BRCA1P38398 LINC02211-204ENST00000642024 1070 ntBASIC2.09□□□□□ -2.08
BRCA1P38398 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC2.09□□□□□ -2.08
BRCA1P38398 SNORA7.1-201ENST00000363750 139 ntBASIC2.08□□□□□ -2.08
BRCA1P38398 AL356057.2-201ENST00000403318 432 ntBASIC2.08□□□□□ -2.08
BRCA1P38398 AC068533.2-201ENST00000411872 306 ntBASIC2.08□□□□□ -2.08
BRCA1P38398 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC2.08□□□□□ -2.08
BRCA1P38398 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.08□□□□□ -2.08
BRCA1P38398 PPP1R2P5-201ENST00000457256 603 ntBASIC2.08□□□□□ -2.08
BRCA1P38398 MEMO1P3-201ENST00000459811 302 ntBASIC2.08□□□□□ -2.08
BRCA1P38398 AC069528.1-202ENST00000482888 637 ntBASIC2.08□□□□□ -2.08
BRCA1P38398 AC092902.1-201ENST00000486999 259 ntBASIC2.08□□□□□ -2.08
BRCA1P38398 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.08□□□□□ -2.08
BRCA1P38398 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC2.08□□□□□ -2.08
BRCA1P38398 RNA5SP216-201ENST00000516111 123 ntBASIC2.08□□□□□ -2.08
BRCA1P38398 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.08□□□□□ -2.08
BRCA1P38398 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.08□□□□□ -2.08
BRCA1P38398 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
BRCA1P38398 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.08□□□□□ -2.08
BRCA1P38398 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC2.08□□□□□ -2.08
BRCA1P38398 AL137003.2-201ENST00000606924 2538 ntBASIC2.08□□□□□ -2.08
BRCA1P38398 AF129408.1-201ENST00000608767 431 ntBASIC2.08□□□□□ -2.08
BRCA1P38398 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2.08□□□□□ -2.08
BRCA1P38398 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
BRCA1P38398 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.08□□□□□ -2.08
BRCA1P38398 AL390862.1-201ENST00000635467 1469 ntBASIC2.07□□□□□ -2.08
BRCA1P38398 MIR96-201ENST00000362288 78 ntBASIC2.07□□□□□ -2.08
BRCA1P38398 Y_RNA.354-201ENST00000365448 111 ntBASIC2.07□□□□□ -2.08
BRCA1P38398 RNU1-109P-201ENST00000383960 147 ntBASIC2.07□□□□□ -2.08
BRCA1P38398 Y_RNA.472-201ENST00000384322 102 ntBASIC2.07□□□□□ -2.08
BRCA1P38398 RNU6-298P-201ENST00000390888 96 ntBASIC2.07□□□□□ -2.08
BRCA1P38398 RPL21P1-201ENST00000399532 476 ntBASIC2.07□□□□□ -2.08
BRCA1P38398 AC069282.1-201ENST00000411911 526 ntBASIC2.07□□□□□ -2.08
BRCA1P38398 RPL21P24-201ENST00000413752 448 ntBASIC2.07□□□□□ -2.08
BRCA1P38398 AL451054.2-201ENST00000420896 202 ntBASIC2.07□□□□□ -2.08
BRCA1P38398 NDUFB4P7-201ENST00000423198 363 ntBASIC2.07□□□□□ -2.08
BRCA1P38398 AC019178.2-201ENST00000423595 505 ntBASIC2.07□□□□□ -2.08
BRCA1P38398 ZNF863P-201ENST00000426746 417 ntBASIC2.07□□□□□ -2.08
BRCA1P38398 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms