Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 MTCO1P21-201ENST00000416634 589 ntBASIC3.34□□□□□ -1.87
HOXC9P31274 AC137499.1-201ENST00000427602 88 ntBASIC3.34□□□□□ -1.87
HOXC9P31274 NEK4P1-201ENST00000433383 879 ntBASIC3.34□□□□□ -1.87
HOXC9P31274 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC3.34□□□□□ -1.87
HOXC9P31274 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
HOXC9P31274 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXC9P31274 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXC9P31274 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HOXC9P31274 MTCO2P29-201ENST00000465212 189 ntBASIC3.34□□□□□ -1.87
HOXC9P31274 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXC9P31274 RN7SL636P-201ENST00000497504 294 ntBASIC3.34□□□□□ -1.87
HOXC9P31274 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.34□□□□□ -1.87
HOXC9P31274 RNU1-61P-201ENST00000516107 151 ntBASIC3.34□□□□□ -1.87
HOXC9P31274 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXC9P31274 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXC9P31274 MIR3167-201ENST00000579623 85 ntBASIC3.34□□□□□ -1.87
HOXC9P31274 AC103710.2-201ENST00000609912 942 ntBASIC3.34□□□□□ -1.87
HOXC9P31274 SDR42E1P2-201ENST00000614861 481 ntBASIC3.34□□□□□ -1.87
HOXC9P31274 AC010133.1-201ENST00000615809 842 ntBASIC3.34□□□□□ -1.87
HOXC9P31274 AC138649.3-201ENST00000622154 254 ntBASIC3.34□□□□□ -1.87
HOXC9P31274 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
HOXC9P31274 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.34□□□□□ -1.88
HOXC9P31274 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.34□□□□□ -1.88
HOXC9P31274 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXC9P31274 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXC9P31274 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXC9P31274 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
HOXC9P31274 Y_RNA.41-201ENST00000362646 102 ntBASIC3.33□□□□□ -1.88
HOXC9P31274 SNORD114-30-201ENST00000364448 72 ntBASIC3.33□□□□□ -1.88
HOXC9P31274 RNU1-100P-201ENST00000365255 165 ntBASIC3.33□□□□□ -1.88
HOXC9P31274 MIR493-201ENST00000385254 89 ntBASIC3.33□□□□□ -1.88
HOXC9P31274 MIR591-201ENST00000385290 95 ntBASIC3.33□□□□□ -1.88
HOXC9P31274 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
HOXC9P31274 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
HOXC9P31274 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXC9P31274 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXC9P31274 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXC9P31274 OR2B8P-201ENST00000432841 938 ntBASIC3.33□□□□□ -1.88
HOXC9P31274 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXC9P31274 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXC9P31274 AL136380.1-201ENST00000447970 162 ntBASIC3.33□□□□□ -1.88
HOXC9P31274 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXC9P31274 SNRPGP6-201ENST00000451124 220 ntBASIC3.33□□□□□ -1.88
HOXC9P31274 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXC9P31274 OFD1P4Y-201ENST00000455273 1179 ntBASIC3.33□□□□□ -1.88
HOXC9P31274 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXC9P31274 AL359385.1-201ENST00000456509 365 ntBASIC3.33□□□□□ -1.88
HOXC9P31274 RNU7-170P-201ENST00000459303 61 ntBASIC3.33□□□□□ -1.88
HOXC9P31274 RPL31P60-201ENST00000478450 367 ntBASIC3.33□□□□□ -1.88
HOXC9P31274 RPS29P21-201ENST00000496272 170 ntBASIC3.33□□□□□ -1.88
HOXC9P31274 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXC9P31274 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXC9P31274 AL359273.1-201ENST00000510918 627 ntBASIC3.33□□□□□ -1.88
HOXC9P31274 SNORA70.16-201ENST00000516390 95 ntBASIC3.33□□□□□ -1.88
HOXC9P31274 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXC9P31274 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXC9P31274 AC011979.2-201ENST00000527568 352 ntBASIC3.33□□□□□ -1.88
HOXC9P31274 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXC9P31274 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXC9P31274 AC087883.1-201ENST00000551882 391 ntBASIC3.33□□□□□ -1.88
HOXC9P31274 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXC9P31274 AC068790.2-201ENST00000602601 557 ntBASIC3.33□□□□□ -1.88
HOXC9P31274 DPPA3P3-201ENST00000603842 430 ntBASIC3.33□□□□□ -1.88
HOXC9P31274 AC104763.2-201ENST00000604179 382 ntBASIC3.33□□□□□ -1.88
HOXC9P31274 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXC9P31274 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXC9P31274 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXC9P31274 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXC9P31274 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXC9P31274 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXC9P31274 RNU6-511P-201ENST00000363496 107 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 RNU6-282P-201ENST00000365357 103 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 RNU6-39P-201ENST00000384344 107 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 MIR514A1-201ENST00000385133 98 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 AL359634.1-202ENST00000404721 284 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXC9P31274 MTND3P17-201ENST00000416968 344 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 PIGFP2-201ENST00000421400 651 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 RPL27AP8-201ENST00000424277 446 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 AC093106.2-201ENST00000428212 385 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 AC133104.1-201ENST00000429100 218 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXC9P31274 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXC9P31274 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXC9P31274 MTATP6P30-201ENST00000443540 664 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 GAPDHP27-201ENST00000447427 1020 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXC9P31274 C1DP4-201ENST00000455429 424 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXC9P31274 AC105252.1-201ENST00000503089 286 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 AC234781.5-201ENST00000508429 271 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 AC105914.1-201ENST00000511798 226 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 AP001804.3-201ENST00000525146 880 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 AC093012.1-202ENST00000549403 582 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXC9P31274 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC3.32□□□□□ -1.88
HOXC9P31274 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXC9P31274 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC3.32□□□□□ -1.88
HOXC9P31274 AP001029.3-201ENST00000588063 596 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 AC068790.6-201ENST00000602558 258 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms