Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 AL133216.2-202ENST00000634512 349 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 AL137003.2-201ENST00000606924 2538 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
HOXD9P28356 AC103710.2-202ENST00000641454 2853 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD9P28356 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD9P28356 MTND4P14-201ENST00000435799 1354 ntBASIC3.51□□□□□ -1.85
HOXD9P28356 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD9P28356 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD9P28356 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
HOXD9P28356 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD9P28356 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD9P28356 RNA5SP197-201ENST00000363357 119 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 Y_RNA.162-201ENST00000363683 102 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 RNU6-82P-201ENST00000363970 107 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 RNU6-188P-201ENST00000364207 107 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD9P28356 RNA5SP120-201ENST00000410900 112 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 USP9YP20-201ENST00000419224 558 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXD9P28356 AL137014.1-201ENST00000420490 1226 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXD9P28356 RPL23AP83-201ENST00000434984 473 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 AL357552.1-201ENST00000445254 415 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXD9P28356 BX510359.1-201ENST00000456973 237 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXD9P28356 RPS4XP2-201ENST00000458402 793 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 RNU7-66P-201ENST00000459469 62 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 RNU6-1208P-201ENST00000459588 107 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 HMGN1P10-201ENST00000474557 553 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 RPL32P34-201ENST00000486380 400 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 AC098591.2-201ENST00000510152 315 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 RNU6-864P-201ENST00000516256 108 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 AP003072.1-201ENST00000531740 145 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXD9P28356 AC005476.1-201ENST00000554427 397 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXD9P28356 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXD9P28356 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXD9P28356 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXD9P28356 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXD9P28356 AC006557.5-201ENST00000603126 811 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXD9P28356 uc_338.34-201ENST00000617467 174 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXD9P28356 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD9P28356 AC008725.1-201ENST00000605123 2263 ntBASIC3.5□□□□□ -1.85
HOXD9P28356 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD9P28356 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXD9P28356 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
HOXD9P28356 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD9P28356 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXD9P28356 DDX10P1-201ENST00000448545 1933 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 RNU6-50P-201ENST00000362356 103 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 Y_RNA.315-201ENST00000365117 102 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXD9P28356 Y_RNA.414-201ENST00000384011 101 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 Y_RNA.576-201ENST00000384781 102 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 RPL21P24-201ENST00000413752 448 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 BTF3L4P3-201ENST00000418879 476 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 AC079780.1-201ENST00000428259 207 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXD9P28356 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXD9P28356 RPS3AP12-201ENST00000443616 753 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 MTND4P19-201ENST00000446659 478 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 GAPDHP27-201ENST00000447427 1020 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD9P28356 AL162389.1-201ENST00000449233 177 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 SNORD19B-201ENST00000459623 84 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 RN7SL432P-201ENST00000484057 298 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 Y_RNA.654-201ENST00000497848 106 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD9P28356 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD9P28356 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD9P28356 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXD9P28356 ZNF192P1-203ENST00000565888 810 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXD9P28356 MIR5195-201ENST00000583555 115 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 MIR4276-201ENST00000584832 70 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 AL670379.6-201ENST00000603753 252 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 AL670379.11-201ENST00000604059 253 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 AC008162.1-201ENST00000604718 254 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 AL670379.1-201ENST00000604752 252 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 AL670379.5-201ENST00000605253 252 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 AL670379.12-201ENST00000605291 253 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 AL670379.8-201ENST00000605353 252 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 AL670379.7-201ENST00000605823 252 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 AL390240.1-201ENST00000612950 384 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 AL360181.4-201ENST00000621752 134 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD9P28356 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
HOXD9P28356 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
HOXD9P28356 AF127577.6-201ENST00000623352 2191 ntBASIC3.49□□□□□ -1.85
HOXD9P28356 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXD9P28356 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXD9P28356 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXD9P28356 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXD9P28356 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms