Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL121769.1-201ENST00000469473 401 ntBASIC3.15□□□□□ -1.91
BDNFP23560 RPS29P26-201ENST00000477483 171 ntBASIC3.15□□□□□ -1.91
BDNFP23560 AC010587.1-201ENST00000505809 469 ntBASIC3.15□□□□□ -1.91
BDNFP23560 SNORA31.19-201ENST00000517079 126 ntBASIC3.15□□□□□ -1.91
BDNFP23560 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC3.15□□□□□ -1.91
BDNFP23560 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.15□□□□□ -1.91
BDNFP23560 ZNF321P-202ENST00000550843 495 ntBASIC3.15□□□□□ -1.91
BDNFP23560 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
BDNFP23560 ROCK1P1-201ENST00000573767 549 ntBASIC3.15□□□□□ -1.91
BDNFP23560 LARP7P3-201ENST00000579888 337 ntBASIC3.15□□□□□ -1.91
BDNFP23560 AC105245.1-201ENST00000581934 244 ntBASIC3.15□□□□□ -1.91
BDNFP23560 AC008121.1-201ENST00000603244 268 ntBASIC3.15□□□□□ -1.91
BDNFP23560 AC112191.3-201ENST00000604371 277 ntBASIC3.15□□□□□ -1.91
BDNFP23560 AC007938.3-201ENST00000604965 623 ntBASIC3.15□□□□□ -1.91
BDNFP23560 AC108479.2-201ENST00000617314 601 ntBASIC3.15□□□□□ -1.91
BDNFP23560 LRRC77P-213ENST00000637727 880 ntBASIC3.15□□□□□ -1.91
BDNFP23560 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
BDNFP23560 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
BDNFP23560 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
BDNFP23560 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
BDNFP23560 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.14□□□□□ -1.91
BDNFP23560 MIR218-1-201ENST00000384999 110 ntBASIC3.14□□□□□ -1.91
BDNFP23560 Y_RNA.598-201ENST00000410480 95 ntBASIC3.14□□□□□ -1.91
BDNFP23560 TEX41-202ENST00000414256 604 ntTSL 5 BASIC3.14□□□□□ -1.91
BDNFP23560 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.14□□□□□ -1.91
BDNFP23560 ELOCP4-201ENST00000420090 333 ntBASIC3.14□□□□□ -1.91
BDNFP23560 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.14□□□□□ -1.91
BDNFP23560 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.14□□□□□ -1.91
BDNFP23560 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
BDNFP23560 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.14□□□□□ -1.91
BDNFP23560 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.14□□□□□ -1.91
BDNFP23560 BZW1P2-201ENST00000473537 826 ntBASIC3.14□□□□□ -1.91
BDNFP23560 AC090096.1-201ENST00000489168 390 ntBASIC3.14□□□□□ -1.91
BDNFP23560 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3.14□□□□□ -1.91
BDNFP23560 AC116655.1-201ENST00000508324 901 ntBASIC3.14□□□□□ -1.91
BDNFP23560 AC112673.1-201ENST00000513168 575 ntBASIC3.14□□□□□ -1.91
BDNFP23560 MIR892C-201ENST00000516410 77 ntBASIC3.14□□□□□ -1.91
BDNFP23560 AP003467.2-201ENST00000520175 319 ntBASIC3.14□□□□□ -1.91
BDNFP23560 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.14□□□□□ -1.91
BDNFP23560 AC008015.1-201ENST00000555505 465 ntBASIC3.14□□□□□ -1.91
BDNFP23560 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.14□□□□□ -1.91
BDNFP23560 AC009163.5-201ENST00000575421 637 ntBASIC3.14□□□□□ -1.91
BDNFP23560 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
BDNFP23560 AC092354.1-201ENST00000606057 376 ntBASIC3.14□□□□□ -1.91
BDNFP23560 AC122133.1-201ENST00000613964 233 ntBASIC3.14□□□□□ -1.91
BDNFP23560 AC079248.2-201ENST00000623779 326 ntBASIC3.14□□□□□ -1.91
BDNFP23560 AC017037.3-201ENST00000625016 472 ntBASIC3.14□□□□□ -1.91
BDNFP23560 PISRT1-201ENST00000626175 531 ntBASIC3.14□□□□□ -1.91
BDNFP23560 AC084035.1-201ENST00000634543 607 ntBASIC3.14□□□□□ -1.91
BDNFP23560 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.14□□□□□ -1.91
BDNFP23560 AC108206.1-201ENST00000570186 4159 ntBASIC3.13□□□□□ -1.91
BDNFP23560 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
BDNFP23560 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
BDNFP23560 U3.6-201ENST00000363622 211 ntBASIC3.13□□□□□ -1.91
BDNFP23560 RNU6-1072P-201ENST00000384703 107 ntBASIC3.13□□□□□ -1.91
BDNFP23560 RNU6-443P-201ENST00000384780 107 ntBASIC3.13□□□□□ -1.91
BDNFP23560 RNA5SP274-201ENST00000410484 108 ntBASIC3.13□□□□□ -1.91
BDNFP23560 RNA5SP344-201ENST00000411081 104 ntBASIC3.13□□□□□ -1.91
BDNFP23560 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.13□□□□□ -1.91
BDNFP23560 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.13□□□□□ -1.91
BDNFP23560 Z98742.2-201ENST00000431564 187 ntBASIC3.13□□□□□ -1.91
BDNFP23560 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.13□□□□□ -1.91
BDNFP23560 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.13□□□□□ -1.91
BDNFP23560 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.13□□□□□ -1.91
BDNFP23560 RPS24P1-201ENST00000438550 371 ntBASIC3.13□□□□□ -1.91
BDNFP23560 UBE2D3P4-201ENST00000441973 436 ntBASIC3.13□□□□□ -1.91
BDNFP23560 USP9YP15-201ENST00000442391 422 ntBASIC3.13□□□□□ -1.91
BDNFP23560 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC3.13□□□□□ -1.91
BDNFP23560 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC3.13□□□□□ -1.91
BDNFP23560 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.13□□□□□ -1.91
BDNFP23560 AL049873.1-201ENST00000480540 376 ntBASIC3.13□□□□□ -1.91
BDNFP23560 SCGB1D5P-201ENST00000515134 247 ntBASIC3.13□□□□□ -1.91
BDNFP23560 RNU6-232P-201ENST00000517144 64 ntBASIC3.13□□□□□ -1.91
BDNFP23560 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.13□□□□□ -1.91
BDNFP23560 AC009902.1-201ENST00000519351 183 ntBASIC3.13□□□□□ -1.91
BDNFP23560 HMGB1P41-201ENST00000520234 440 ntBASIC3.13□□□□□ -1.91
BDNFP23560 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC3.13□□□□□ -1.91
BDNFP23560 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC3.13□□□□□ -1.91
BDNFP23560 RNU6-91P-201ENST00000607774 107 ntBASIC3.13□□□□□ -1.91
BDNFP23560 AC130324.3-201ENST00000614165 542 ntBASIC3.13□□□□□ -1.91
BDNFP23560 HMGB1P24-202ENST00000615653 685 ntBASIC3.13□□□□□ -1.91
BDNFP23560 AC104010.1-201ENST00000616889 150 ntBASIC3.13□□□□□ -1.91
BDNFP23560 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.13□□□□□ -1.91
BDNFP23560 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
BDNFP23560 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
BDNFP23560 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
BDNFP23560 SNORA40C-201ENST00000391285 128 ntBASIC3.12□□□□□ -1.91
BDNFP23560 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC3.12□□□□□ -1.91
BDNFP23560 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC3.12□□□□□ -1.91
BDNFP23560 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC3.12□□□□□ -1.91
BDNFP23560 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.12□□□□□ -1.91
BDNFP23560 AL139132.1-201ENST00000431587 344 ntBASIC3.12□□□□□ -1.91
BDNFP23560 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC3.12□□□□□ -1.91
BDNFP23560 RPS15AP9-201ENST00000439856 381 ntBASIC3.12□□□□□ -1.91
BDNFP23560 AC025750.2-201ENST00000442609 450 ntBASIC3.12□□□□□ -1.91
BDNFP23560 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.12□□□□□ -1.91
BDNFP23560 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC3.12□□□□□ -1.91
BDNFP23560 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC3.12□□□□□ -1.91
BDNFP23560 RNU6-581P-201ENST00000516214 105 ntBASIC3.12□□□□□ -1.91
BDNFP23560 Y_RNA.672-201ENST00000516289 104 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms