Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AC009296.1-201ENST00000443146 155 ntBASIC0.32□□□□□ -2.36
APOBP04114 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC0.32□□□□□ -2.36
APOBP04114 RPL30P14-201ENST00000482744 348 ntBASIC0.32□□□□□ -2.36
APOBP04114 AC139453.3-201ENST00000493276 369 ntBASIC0.32□□□□□ -2.36
APOBP04114 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC0.32□□□□□ -2.36
APOBP04114 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC0.32□□□□□ -2.36
APOBP04114 AP001269.3-201ENST00000588718 329 ntBASIC0.32□□□□□ -2.36
APOBP04114 AC146944.4-201ENST00000602697 718 ntBASIC0.32□□□□□ -2.36
APOBP04114 AC067838.1-201ENST00000606064 577 ntBASIC0.32□□□□□ -2.36
APOBP04114 AC012676.2-201ENST00000619258 186 ntBASIC0.32□□□□□ -2.36
APOBP04114 Y_RNA.142-201ENST00000363491 102 ntBASIC0.31□□□□□ -2.36
APOBP04114 Y_RNA.167-201ENST00000363735 109 ntBASIC0.31□□□□□ -2.36
APOBP04114 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC0.31□□□□□ -2.36
APOBP04114 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC0.31□□□□□ -2.36
APOBP04114 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC0.31□□□□□ -2.36
APOBP04114 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC0.31□□□□□ -2.36
APOBP04114 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC0.31□□□□□ -2.36
APOBP04114 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.31□□□□□ -2.36
APOBP04114 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC0.31□□□□□ -2.36
APOBP04114 Y_RNA.324-201ENST00000365165 102 ntBASIC0.31□□□□□ -2.36
APOBP04114 VN1R42P-201ENST00000424651 344 ntBASIC0.31□□□□□ -2.36
APOBP04114 AL161651.1-201ENST00000440882 223 ntBASIC0.31□□□□□ -2.36
APOBP04114 AL157398.1-201ENST00000452981 186 ntBASIC0.31□□□□□ -2.36
APOBP04114 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.31□□□□□ -2.36
APOBP04114 AC012254.4-201ENST00000588843 273 ntBASIC0.31□□□□□ -2.36
APOBP04114 RNU4-42P-201ENST00000364738 142 ntBASIC0.31□□□□□ -2.36
APOBP04114 SNORA8.3-201ENST00000384679 139 ntBASIC0.31□□□□□ -2.36
APOBP04114 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC0.31□□□□□ -2.36
APOBP04114 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC0.31□□□□□ -2.36
APOBP04114 ARPC3P5-201ENST00000448802 534 ntBASIC0.31□□□□□ -2.36
APOBP04114 AC105914.1-201ENST00000511798 226 ntBASIC0.31□□□□□ -2.36
APOBP04114 RNU6-964P-201ENST00000516524 69 ntBASIC0.31□□□□□ -2.36
APOBP04114 AP003355.1-201ENST00000518956 587 ntBASIC0.31□□□□□ -2.36
APOBP04114 FAM106CP-201ENST00000582212 507 ntBASIC0.31□□□□□ -2.36
APOBP04114 AC008739.2-201ENST00000597006 317 ntBASIC0.31□□□□□ -2.36
APOBP04114 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC0.31□□□□□ -2.36
APOBP04114 RNU6-1072P-201ENST00000384703 107 ntBASIC0.31□□□□□ -2.36
APOBP04114 RNU6-443P-201ENST00000384780 107 ntBASIC0.31□□□□□ -2.36
APOBP04114 MIR153-1-201ENST00000384914 90 ntBASIC0.31□□□□□ -2.36
APOBP04114 RNU6-272P-201ENST00000411028 104 ntBASIC0.31□□□□□ -2.36
APOBP04114 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC0.31□□□□□ -2.36
APOBP04114 TRGVB-201ENST00000453257 471 ntBASIC0.31□□□□□ -2.36
APOBP04114 AC005741.1-201ENST00000511094 432 ntBASIC0.31□□□□□ -2.36
APOBP04114 RNU6-347P-201ENST00000516658 105 ntBASIC0.31□□□□□ -2.36
APOBP04114 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC0.31□□□□□ -2.36
APOBP04114 MIR4422-201ENST00000581938 83 ntBASIC0.31□□□□□ -2.36
APOBP04114 AL136313.1-201ENST00000624804 202 ntBASIC0.31□□□□□ -2.36
APOBP04114 MTCO1P56-201ENST00000401674 224 ntBASIC0.3□□□□□ -2.36
APOBP04114 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.3□□□□□ -2.36
APOBP04114 AC244098.2-201ENST00000422068 99 ntBASIC0.3□□□□□ -2.36
APOBP04114 HSPE1P21-201ENST00000438283 308 ntBASIC0.3□□□□□ -2.36
APOBP04114 AC067940.1-201ENST00000458411 300 ntBASIC0.3□□□□□ -2.36
APOBP04114 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC0.3□□□□□ -2.36
APOBP04114 RPL21P136-201ENST00000605378 396 ntBASIC0.3□□□□□ -2.36
APOBP04114 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC0.3□□□□□ -2.36
APOBP04114 XKRYP1-201ENST00000423438 492 ntBASIC0.3□□□□□ -2.36
APOBP04114 EIF4EP4-201ENST00000424916 578 ntBASIC0.3□□□□□ -2.36
APOBP04114 XKRYP2-201ENST00000432915 492 ntBASIC0.3□□□□□ -2.36
APOBP04114 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC0.3□□□□□ -2.36
APOBP04114 AP005902.1-201ENST00000521358 186 ntBASIC0.3□□□□□ -2.36
APOBP04114 AC006518.2-201ENST00000542513 940 ntBASIC0.3□□□□□ -2.36
APOBP04114 CYCSP2-201ENST00000558168 301 ntBASIC0.3□□□□□ -2.36
APOBP04114 MIR5589-201ENST00000579442 60 ntBASIC0.3□□□□□ -2.36
APOBP04114 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC0.3□□□□□ -2.36
APOBP04114 AC002550.2-201ENST00000621246 394 ntBASIC0.3□□□□□ -2.36
APOBP04114 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC0.3□□□□□ -2.36
APOBP04114 AP000776.1-201ENST00000530032 1663 ntBASIC0.3□□□□□ -2.36
APOBP04114 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC0.3□□□□□ -2.36
APOBP04114 RNU4-67P-201ENST00000364569 141 ntBASIC0.3□□□□□ -2.36
APOBP04114 SNORA4.3-201ENST00000365564 137 ntBASIC0.3□□□□□ -2.36
APOBP04114 AL606495.1-201ENST00000422100 813 ntBASIC0.3□□□□□ -2.36
APOBP04114 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC0.3□□□□□ -2.36
APOBP04114 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC0.3□□□□□ -2.36
APOBP04114 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.3□□□□□ -2.36
APOBP04114 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC0.3□□□□□ -2.36
APOBP04114 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC0.3□□□□□ -2.36
APOBP04114 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC0.3□□□□□ -2.36
APOBP04114 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC0.3□□□□□ -2.36
APOBP04114 AL592148.2-201ENST00000612210 372 ntBASIC0.3□□□□□ -2.36
APOBP04114 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC0.3□□□□□ -2.36
APOBP04114 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC0.3□□□□□ -2.36
APOBP04114 AC013268.2-201ENST00000420753 337 ntBASIC0.3□□□□□ -2.36
APOBP04114 AC022022.1-201ENST00000430304 178 ntBASIC0.3□□□□□ -2.36
APOBP04114 USP9YP35-201ENST00000435696 412 ntBASIC0.3□□□□□ -2.36
APOBP04114 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC0.3□□□□□ -2.36
APOBP04114 AC091435.1-201ENST00000505442 584 ntBASIC0.3□□□□□ -2.36
APOBP04114 RNU4-57P-201ENST00000515980 135 ntBASIC0.3□□□□□ -2.36
APOBP04114 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC0.3□□□□□ -2.36
APOBP04114 MIR3198-2-201ENST00000577868 80 ntBASIC0.3□□□□□ -2.36
APOBP04114 AC010620.1-201ENST00000601088 1102 ntBASIC0.3□□□□□ -2.36
APOBP04114 AC007038.2-201ENST00000608095 740 ntBASIC0.3□□□□□ -2.36
APOBP04114 AL121890.5-201ENST00000620848 304 ntBASIC0.3□□□□□ -2.36
APOBP04114 RPL7P30-201ENST00000420888 709 ntBASIC0.29□□□□□ -2.36
APOBP04114 PRPS1P1-201ENST00000445305 876 ntBASIC0.29□□□□□ -2.36
APOBP04114 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.29□□□□□ -2.36
APOBP04114 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC0.29□□□□□ -2.36
APOBP04114 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC0.29□□□□□ -2.36
APOBP04114 SNORA3A-201ENST00000364113 130 ntBASIC0.29□□□□□ -2.36
APOBP04114 RNU6-1187P-201ENST00000364771 110 ntBASIC0.29□□□□□ -2.36
APOBP04114 MIR618-201ENST00000385287 98 ntBASIC0.29□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms