Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 ARL5AP1-201ENST00000418991 388 ntBASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 HSPE1P1-201ENST00000421494 318 ntBASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 AL158071.1-201ENST00000430315 461 ntBASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 RPL23AP89-201ENST00000439324 255 ntBASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 TRAPPC2P3-201ENST00000443200 321 ntBASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 AL078601.1-201ENST00000444542 271 ntBASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 AL360271.2-201ENST00000447710 161 ntBASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 RPL31P58-201ENST00000469001 379 ntBASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 AC009901.1-201ENST00000506703 541 ntBASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 IGLV3-26-201ENST00000520756 302 ntBASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 AL133241.1-201ENST00000556832 487 ntBASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 MIR4782-201ENST00000577987 79 ntBASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 U2.17-201ENST00000611454 95 ntBASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 AL020991.1-201ENST00000612314 373 ntBASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 AC004852.3-201ENST00000614131 326 ntBASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 U2.21-201ENST00000637295 81 ntBASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 AC024614.3-201ENST00000637860 256 ntBASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
CCDC9Q9Y3X0 LINC02471-203ENST00000641941 4752 ntBASIC5.15□□□□□ -1.58
CCDC9Q9Y3X0 MFSD8-236ENST00000641509 4050 ntBASIC5.15□□□□□ -1.58
CCDC9Q9Y3X0 SRP72P2-201ENST00000344851 1979 ntBASIC5.15□□□□□ -1.58
CCDC9Q9Y3X0 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 RNU6-778P-201ENST00000363269 103 ntBASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 RNU1-101P-201ENST00000391171 127 ntBASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 RNA5SP118-201ENST00000410385 109 ntBASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 AL669831.1-202ENST00000428504 417 ntBASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 HMGB1P9-201ENST00000429856 646 ntBASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 AL121601.2-201ENST00000438019 707 ntBASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 GTF2IP13-201ENST00000438487 386 ntBASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 MTATP6P7-201ENST00000453315 681 ntBASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 RPL21P13-201ENST00000488305 481 ntBASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 AL137843.1-201ENST00000605078 385 ntBASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 Z82243.1-201ENST00000609432 473 ntBASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC9Q9Y3X0 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 SNORA38.1-201ENST00000364172 131 ntBASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 RNU4-20P-201ENST00000365601 151 ntBASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 RNU6-38P-201ENST00000384085 107 ntBASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 RNA5SP120-201ENST00000410900 112 ntBASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 OFD1P1Y-201ENST00000411756 1225 ntBASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 MYL8P-204ENST00000431574 518 ntBASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 RANP8-201ENST00000444720 713 ntBASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 RNU6-333P-201ENST00000459117 107 ntBASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 AP002884.2-201ENST00000471647 395 ntBASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 RNU6-703P-201ENST00000516946 107 ntBASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 NACAP3-201ENST00000552100 481 ntBASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 SLC25A36P1-201ENST00000590111 465 ntBASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 AC012119.1-201ENST00000603184 222 ntBASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 RMST_3.1-201ENST00000611651 109 ntBASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 AC140113.4-201ENST00000622087 222 ntBASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 AC022418.1-201ENST00000624118 445 ntBASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 AP003400.5-201ENST00000624827 617 ntBASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC9Q9Y3X0 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 MIR448-201ENST00000362131 111 ntBASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 SNORA14A-201ENST00000364773 135 ntBASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 PARD3-204ENST00000374768 799 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 SNORA40C-201ENST00000391285 128 ntBASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 AL356057.2-201ENST00000403318 432 ntBASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 RPS4XP7-201ENST00000406274 780 ntBASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 SKA2P1-201ENST00000425592 390 ntBASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 ERLEC1P1-201ENST00000433806 578 ntBASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 PRPS1P1-201ENST00000445305 876 ntBASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 AL583843.1-201ENST00000456070 346 ntBASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 AC114786.4-201ENST00000508771 728 ntBASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 AC074344.1-201ENST00000512823 224 ntBASIC5.13□□□□□ -1.59
CCDC9Q9Y3X0 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms