Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RN7SL442P-201ENST00000473804 320 ntBASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 MEPE-206ENST00000511670 550 ntTSL 4 BASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 RN7SKP13-201ENST00000515933 244 ntBASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 PSMA2P1-201ENST00000526365 646 ntBASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 AC022893.3-201ENST00000607665 437 ntBASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 AC107294.1-201ENST00000609524 467 ntBASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
LIMCH1Q9UPQ0 AC008568.2-201ENST00000623862 2313 ntBASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 RNU6-50P-201ENST00000362356 103 ntBASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 RNU6-288P-201ENST00000363690 104 ntBASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 RN7SKP32-201ENST00000410167 303 ntBASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 SYF2P2-201ENST00000417620 583 ntBASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 AL445584.1-201ENST00000431451 330 ntBASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 HMGN1P18-201ENST00000457642 277 ntBASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 AC104619.4-201ENST00000510773 249 ntBASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 RNU1-95P-201ENST00000516357 160 ntBASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 RNU1-128P-201ENST00000516704 160 ntBASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 RNA5SP468-201ENST00000516782 93 ntBASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 RNU6-1314P-201ENST00000517139 104 ntBASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 AC022690.1-201ENST00000526681 550 ntBASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 AC004024.1-201ENST00000549244 247 ntBASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 AC106782.4-201ENST00000568264 210 ntBASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 AC006557.5-201ENST00000603126 811 ntBASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 AC090617.10-201ENST00000624308 134 ntBASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 AL133383.2-201ENST00000622958 2336 ntBASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
LIMCH1Q9UPQ0 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 ZNF285B-201ENST00000561698 1767 ntBASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 AL356274.2-201ENST00000624379 3752 ntBASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 Y_RNA.263-201ENST00000364659 114 ntBASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 AL356967.1-201ENST00000406305 431 ntBASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 CRYBB2P1-203ENST00000415709 538 ntBASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 RBMY2UP-201ENST00000453474 324 ntBASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 Y_RNA.654-201ENST00000497848 106 ntBASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 APOOP4-201ENST00000513530 597 ntBASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 SNORA70.16-201ENST00000516390 95 ntBASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 RNU6-143P-201ENST00000516942 93 ntBASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 AC087241.2-201ENST00000535801 324 ntBASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 AC243972.3-201ENST00000539655 198 ntBASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 AC009570.1-201ENST00000609599 745 ntBASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 AC009093.8-201ENST00000641769 292 ntBASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 AC121333.1-201ENST00000567488 2709 ntBASIC3.99□□□□□ -1.77
LIMCH1Q9UPQ0 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 Y_RNA.142-201ENST00000363491 102 ntBASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 CISD1P1-201ENST00000393907 327 ntBASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 UBE2V1P2-201ENST00000397758 440 ntBASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 Y_RNA.615-201ENST00000410769 117 ntBASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 MTND3P23-201ENST00000431980 347 ntBASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 SCARNA18-201ENST00000459004 134 ntBASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms