Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 MTND4P27-201ENST00000450813 1354 ntBASIC4.73□□□□□ -1.65
DDX41Q9UJV9 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.73□□□□□ -1.65
DDX41Q9UJV9 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
DDX41Q9UJV9 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
DDX41Q9UJV9 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
DDX41Q9UJV9 HSPA8P1-201ENST00000425843 1833 ntBASIC4.72□□□□□ -1.65
DDX41Q9UJV9 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
DDX41Q9UJV9 Y_RNA.146-201ENST00000363549 102 ntBASIC4.72□□□□□ -1.65
DDX41Q9UJV9 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.72□□□□□ -1.65
DDX41Q9UJV9 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.72□□□□□ -1.65
DDX41Q9UJV9 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC4.72□□□□□ -1.65
DDX41Q9UJV9 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.72□□□□□ -1.65
DDX41Q9UJV9 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC4.72□□□□□ -1.65
DDX41Q9UJV9 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.72□□□□□ -1.65
DDX41Q9UJV9 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC4.72□□□□□ -1.65
DDX41Q9UJV9 BRK1P2-201ENST00000442875 223 ntBASIC4.72□□□□□ -1.65
DDX41Q9UJV9 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC4.72□□□□□ -1.65
DDX41Q9UJV9 RPS29P19-201ENST00000479709 171 ntBASIC4.72□□□□□ -1.65
DDX41Q9UJV9 RN7SL604P-201ENST00000492589 296 ntBASIC4.72□□□□□ -1.65
DDX41Q9UJV9 AC020593.1-201ENST00000507399 299 ntBASIC4.72□□□□□ -1.65
DDX41Q9UJV9 AC096745.1-201ENST00000509945 370 ntBASIC4.72□□□□□ -1.65
DDX41Q9UJV9 AC087369.1-201ENST00000520775 996 ntBASIC4.72□□□□□ -1.65
DDX41Q9UJV9 AP003122.3-201ENST00000526316 255 ntBASIC4.72□□□□□ -1.65
DDX41Q9UJV9 AC084851.1-201ENST00000529105 249 ntBASIC4.72□□□□□ -1.65
DDX41Q9UJV9 NUTF2P8-201ENST00000604593 363 ntBASIC4.72□□□□□ -1.65
DDX41Q9UJV9 AC080078.3-201ENST00000605407 463 ntBASIC4.72□□□□□ -1.65
DDX41Q9UJV9 RNU6ATAC35P-201ENST00000609276 444 ntBASIC4.72□□□□□ -1.65
DDX41Q9UJV9 AC005344.1-201ENST00000613391 459 ntBASIC4.72□□□□□ -1.65
DDX41Q9UJV9 MIR6875-201ENST00000617506 72 ntBASIC4.72□□□□□ -1.65
DDX41Q9UJV9 AC019278.1-201ENST00000623516 479 ntBASIC4.72□□□□□ -1.65
DDX41Q9UJV9 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.72□□□□□ -1.65
DDX41Q9UJV9 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
DDX41Q9UJV9 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.72□□□□□ -1.65
DDX41Q9UJV9 AL359693.1-201ENST00000614959 2407 ntBASIC4.72□□□□□ -1.65
DDX41Q9UJV9 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
DDX41Q9UJV9 AC007785.2-201ENST00000598627 1916 ntBASIC4.72□□□□□ -1.65
DDX41Q9UJV9 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC4.72□□□□□ -1.65
DDX41Q9UJV9 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.72□□□□□ -1.65
DDX41Q9UJV9 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.65
DDX41Q9UJV9 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
DDX41Q9UJV9 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.65
DDX41Q9UJV9 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.71□□□□□ -1.65
DDX41Q9UJV9 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
DDX41Q9UJV9 Y_RNA.394-201ENST00000383942 103 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 SNORD116-29-201ENST00000384516 83 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 MIR3074-201ENST00000384885 81 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.71□□□□□ -1.66
DDX41Q9UJV9 ATG3P1-201ENST00000419507 911 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 UBE2V1P4-201ENST00000425374 344 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 SKA2P1-201ENST00000425592 390 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.71□□□□□ -1.66
DDX41Q9UJV9 TOMM20P4-201ENST00000427861 435 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 RANP8-201ENST00000444720 713 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC4.71□□□□□ -1.66
DDX41Q9UJV9 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.71□□□□□ -1.66
DDX41Q9UJV9 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.71□□□□□ -1.66
DDX41Q9UJV9 Y_RNA.653-201ENST00000459091 95 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 AC084198.1-201ENST00000477747 402 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.71□□□□□ -1.66
DDX41Q9UJV9 AC027575.1-201ENST00000481064 460 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 HMGB3P15-201ENST00000507326 574 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.71□□□□□ -1.66
DDX41Q9UJV9 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
DDX41Q9UJV9 FTH1P9-201ENST00000513251 355 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 RNU4ATAC7P-201ENST00000516280 125 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 MIR892C-201ENST00000516410 77 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.71□□□□□ -1.66
DDX41Q9UJV9 AC022655.2-201ENST00000577280 318 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 MIR4286-201ENST00000580651 93 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 OR1M4P-201ENST00000589199 287 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 MIR6128-201ENST00000615528 109 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 MIR7151-201ENST00000617477 60 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 AL713922.2-201ENST00000619384 716 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 AC134503.1-201ENST00000633048 54 ntBASIC4.71□□□□□ -1.66
DDX41Q9UJV9 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.71□□□□□ -1.66
DDX41Q9UJV9 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
DDX41Q9UJV9 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
DDX41Q9UJV9 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.7□□□□□ -1.66
DDX41Q9UJV9 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.7□□□□□ -1.66
DDX41Q9UJV9 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
DDX41Q9UJV9 MIR412-201ENST00000362142 91 ntBASIC4.7□□□□□ -1.66
DDX41Q9UJV9 Y_RNA.128-201ENST00000363391 112 ntBASIC4.7□□□□□ -1.66
DDX41Q9UJV9 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
DDX41Q9UJV9 RNU6-954P-201ENST00000411355 107 ntBASIC4.7□□□□□ -1.66
DDX41Q9UJV9 RPL23AP46-201ENST00000438548 490 ntBASIC4.7□□□□□ -1.66
DDX41Q9UJV9 Z82210.1-201ENST00000440037 231 ntBASIC4.7□□□□□ -1.66
DDX41Q9UJV9 ABCF2P2-201ENST00000450549 296 ntBASIC4.7□□□□□ -1.66
DDX41Q9UJV9 SNORA84-201ENST00000459229 133 ntBASIC4.7□□□□□ -1.66
DDX41Q9UJV9 AC022493.1-201ENST00000492984 337 ntBASIC4.7□□□□□ -1.66
DDX41Q9UJV9 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.7□□□□□ -1.66
DDX41Q9UJV9 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC4.7□□□□□ -1.66
DDX41Q9UJV9 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC4.7□□□□□ -1.66
DDX41Q9UJV9 SCARNA15.1-201ENST00000516384 125 ntBASIC4.7□□□□□ -1.66
DDX41Q9UJV9 RNU6-1016P-201ENST00000516689 94 ntBASIC4.7□□□□□ -1.66
DDX41Q9UJV9 AP003072.1-201ENST00000531740 145 ntBASIC4.7□□□□□ -1.66
DDX41Q9UJV9 TRAV37-201ENST00000553906 342 ntBASIC4.7□□□□□ -1.66
DDX41Q9UJV9 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
DDX41Q9UJV9 RNU6-85P-201ENST00000605989 107 ntBASIC4.7□□□□□ -1.66
DDX41Q9UJV9 PISRT1.1-201ENST00000616930 107 ntBASIC4.7□□□□□ -1.66
DDX41Q9UJV9 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 164.5 ms