Protein–RNA interactions for Protein: Q9P1Z3

HCN3, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HCN3Q9P1Z3 ATP5C1P1-201ENST00000441945 895 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 Z99127.3-201ENST00000448158 395 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 SUMO2P6-201ENST00000505273 288 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 PHBP14-201ENST00000512887 367 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 Y_RNA.704-201ENST00000516851 102 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 MTATP6P3-201ENST00000581686 676 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 AC006557.5-201ENST00000603126 811 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 AL138889.2-201ENST00000603883 242 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 AC008945.2-201ENST00000606056 604 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 AC004492.1-201ENST00000607036 742 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 AL161629.2-201ENST00000615347 275 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 AC022149.2-201ENST00000621061 203 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 AC024940.5-201ENST00000622889 474 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 MTND4P35-201ENST00000604257 1375 ntBASIC3.25□□□□□ -1.89
HCN3Q9P1Z3 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 AL359693.1-201ENST00000614959 2407 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 RNU6-996P-201ENST00000365438 107 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 Y_RNA.481-201ENST00000384373 102 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 AL136116.1-201ENST00000403591 381 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 OR6C66P-201ENST00000414917 930 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 AC063979.1-201ENST00000415539 377 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 ZNF885P-201ENST00000420174 1098 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 MTCYBP8-201ENST00000422855 651 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 RPL7P46-201ENST00000425129 740 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 NDUFAF4P4-201ENST00000454883 502 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 AL356010.1-201ENST00000456364 102 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 AC008155.2-201ENST00000464337 397 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 RPL21P8-201ENST00000465083 535 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 AC126182.1-201ENST00000478134 357 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 AC092436.1-201ENST00000506450 503 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 ARL4AP2-201ENST00000507378 601 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 AC117522.3-201ENST00000507974 584 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 AC105417.1-201ENST00000514691 285 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 SNORD59.2-201ENST00000516873 68 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 RNU6-1315P-201ENST00000517187 99 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 IGKV2-26-201ENST00000518305 343 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 OR5BN1P-201ENST00000532955 829 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 AC011611.1-201ENST00000552179 197 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 TGIF1P1-201ENST00000558095 802 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 MIR4703-201ENST00000577728 79 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 SRGNP1-201ENST00000603392 451 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 AP001330.5-201ENST00000607176 411 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 AC032011.1-201ENST00000611703 1549 ntBASIC3.24□□□□□ -1.89
HCN3Q9P1Z3 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AC005183.1-201ENST00000603687 1979 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 MFSD8-233ENST00000641482 4860 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 RNU6-1322P-201ENST00000364309 107 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 Y_RNA.554-201ENST00000384672 102 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 MIR181A1-201ENST00000385026 110 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 RNU6-550P-201ENST00000391057 101 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 Z99755.1-201ENST00000414048 380 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AL158156.1-201ENST00000422509 473 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 HMGN2P30-201ENST00000423237 256 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AC097713.2-201ENST00000430199 356 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AL591704.1-201ENST00000432574 275 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AL596276.1-201ENST00000434465 418 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AL357552.1-201ENST00000445254 415 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AC008264.1-201ENST00000447612 367 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AC104058.1-201ENST00000448028 297 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 AC093392.2-201ENST00000450682 337 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 FDX1P2-201ENST00000450769 375 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 FCF1P3-201ENST00000496394 590 ntBASIC3.23□□□□□ -1.89
HCN3Q9P1Z3 EIF4EP3-201ENST00000498782 656 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms