Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.28□□□□□ -2.2
SCN3AQ9NY46 NANOGP2-201ENST00000435391 727 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 RPS15AP5-201ENST00000436276 388 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AC114878.1-201ENST00000441166 358 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AL096803.2-201ENST00000450032 677 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC1.28□□□□□ -2.2
SCN3AQ9NY46 RPS29P29-201ENST00000456396 171 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 MTCO1P42-201ENST00000457379 726 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AC087441.2-201ENST00000529141 262 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AC023824.3-201ENST00000569003 562 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 MIR3199-1-201ENST00000582434 88 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 SEPT7P9-203ENST00000604116 343 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AL139344.1-201ENST00000605228 195 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AC100814.1-201ENST00000606963 623 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AC008498.1-201ENST00000613012 531 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 uc_338.14-201ENST00000613162 166 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AL118508.4-201ENST00000624142 1176 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 U2.21-201ENST00000637295 81 ntBASIC1.28□□□□□ -2.2
SCN3AQ9NY46 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.28□□□□□ -2.2
SCN3AQ9NY46 RNU6-1066P-201ENST00000363573 105 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 RNU6-53P-201ENST00000365367 106 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 TAF13P2-201ENST00000416876 286 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 ZNF863P-201ENST00000426746 417 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 VN1R108P-201ENST00000431580 830 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 RNU1-123P-201ENST00000458950 160 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AC008526.1-201ENST00000509149 338 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AF131216.2-201ENST00000512316 564 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AL022067.1-201ENST00000602426 454 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AC025165.5-201ENST00000602802 578 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AL109918.3-201ENST00000603072 338 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC1.27□□□□□ -2.21
SCN3AQ9NY46 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
SCN3AQ9NY46 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC1.27□□□□□ -2.21
SCN3AQ9NY46 SNORD65C-201ENST00000390962 71 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AL139098.1-201ENST00000407291 389 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC1.27□□□□□ -2.21
SCN3AQ9NY46 VN1R36P-201ENST00000414936 291 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 CCDC58P2-201ENST00000417131 366 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC1.27□□□□□ -2.21
SCN3AQ9NY46 RNFT1P2-201ENST00000443064 757 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 RPL39P6-201ENST00000448289 150 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AC093801.2-201ENST00000503966 1050 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AF213884.2-201ENST00000510417 903 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AC040174.2-201ENST00000602701 465 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AL450270.1-201ENST00000606160 391 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AC135507.1-201ENST00000607214 561 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AC007349.4-201ENST00000608114 532 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.27□□□□□ -2.21
SCN3AQ9NY46 AL359854.1-201ENST00000614203 1594 ntBASIC1.26□□□□□ -2.21
SCN3AQ9NY46 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
SCN3AQ9NY46 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
SCN3AQ9NY46 RNU1-72P-201ENST00000362976 153 ntBASIC1.26□□□□□ -2.21
SCN3AQ9NY46 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
SCN3AQ9NY46 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC1.26□□□□□ -2.21
SCN3AQ9NY46 MIR320A-201ENST00000385302 82 ntBASIC1.26□□□□□ -2.21
SCN3AQ9NY46 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.26□□□□□ -2.21
SCN3AQ9NY46 MIR888-201ENST00000401186 77 ntBASIC1.26□□□□□ -2.21
SCN3AQ9NY46 RN7SKP51-201ENST00000410781 304 ntBASIC1.26□□□□□ -2.21
SCN3AQ9NY46 AC004965.1-201ENST00000413033 213 ntBASIC1.26□□□□□ -2.21
SCN3AQ9NY46 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC1.26□□□□□ -2.21
SCN3AQ9NY46 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC1.26□□□□□ -2.21
SCN3AQ9NY46 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC1.26□□□□□ -2.21
SCN3AQ9NY46 SDCBPP1-201ENST00000440192 890 ntBASIC1.26□□□□□ -2.21
SCN3AQ9NY46 Z73417.1-201ENST00000447373 778 ntBASIC1.26□□□□□ -2.21
SCN3AQ9NY46 SNRPGP9-201ENST00000456025 225 ntBASIC1.26□□□□□ -2.21
SCN3AQ9NY46 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC1.26□□□□□ -2.21
SCN3AQ9NY46 RNU6-775P-201ENST00000459318 96 ntBASIC1.26□□□□□ -2.21
SCN3AQ9NY46 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
SCN3AQ9NY46 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC1.26□□□□□ -2.21
SCN3AQ9NY46 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC1.26□□□□□ -2.21
SCN3AQ9NY46 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC1.26□□□□□ -2.21
SCN3AQ9NY46 AC138915.2-201ENST00000569776 97 ntBASIC1.26□□□□□ -2.21
SCN3AQ9NY46 MIR4637-201ENST00000582405 84 ntBASIC1.26□□□□□ -2.21
SCN3AQ9NY46 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC1.26□□□□□ -2.21
SCN3AQ9NY46 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
SCN3AQ9NY46 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC1.26□□□□□ -2.21
SCN3AQ9NY46 AC010889.1-201ENST00000566193 2666 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC1.25□□□□□ -2.21
SCN3AQ9NY46 MIR337-201ENST00000362281 93 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 Y_RNA.116-201ENST00000363292 103 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 SNORA16B-201ENST00000364674 135 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 RNA5SP450-201ENST00000411206 102 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 SNORD56-201ENST00000413522 71 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 TEX41-202ENST00000414256 604 ntTSL 5 BASIC1.25□□□□□ -2.21
SCN3AQ9NY46 AL451054.2-201ENST00000420896 202 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 AL445669.1-201ENST00000426743 755 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 MTND4LP7-201ENST00000431728 294 ntBASIC1.25□□□□□ -2.21
SCN3AQ9NY46 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.25□□□□□ -2.21
SCN3AQ9NY46 AC026410.2-201ENST00000460281 156 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms