Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 RNU2-63P-201ENST00000410792 194 ntBASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 VN1R51P-201ENST00000411675 945 ntBASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 AC069282.1-201ENST00000411911 526 ntBASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 AC097463.2-201ENST00000421074 142 ntBASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 USP9YP11-201ENST00000427537 717 ntBASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 TRBV26OR9-2-201ENST00000432077 293 ntBASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 RPL21P133-201ENST00000443666 476 ntBASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 RPL36AP48-201ENST00000485521 314 ntBASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 AC026801.1-201ENST00000497178 464 ntBASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 AC020699.1-201ENST00000505161 445 ntBASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 AKIRIN2P1-201ENST00000505898 352 ntBASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 MRPS17P9-201ENST00000511924 393 ntBASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 SNORA26.10-201ENST00000516427 141 ntBASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 AC107953.1-201ENST00000522216 297 ntBASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 AC012213.3-201ENST00000577199 777 ntBASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 AC008739.3-201ENST00000603262 127 ntBASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 MIR8057-201ENST00000620957 69 ntBASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 AC034229.5-201ENST00000624258 185 ntBASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 PCMTD1P7-201ENST00000634506 357 ntBASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 ZNF702P-202ENST00000434269 1966 ntBASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
VCX3AQ9NNX9 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 RNU6-188P-201ENST00000364207 107 ntBASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 MIR19A-201ENST00000384878 82 ntBASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 HMGN2P39-201ENST00000398005 273 ntBASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 AC016769.2-201ENST00000414815 475 ntBASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 OR51A5P-201ENST00000415429 942 ntBASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 RPS24P7-201ENST00000416921 246 ntBASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 AL449283.1-202ENST00000418249 604 ntBASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 NUP35P1-201ENST00000422734 947 ntBASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 AIMP1P2-201ENST00000425294 312 ntBASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 AC104651.1-201ENST00000427559 735 ntBASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 AC005094.1-201ENST00000440420 368 ntBASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 AC009238.1-201ENST00000442165 424 ntBASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 AC009237.6-201ENST00000446969 424 ntBASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 RPL22P13-201ENST00000493291 347 ntBASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 RNU6-1183P-201ENST00000517054 60 ntBASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 OR2AS2P-201ENST00000606902 342 ntBASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 AC131235.4-201ENST00000609288 620 ntBASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 MTND5P33-201ENST00000571250 1450 ntBASIC1.8□□□□□ -2.12
VCX3AQ9NNX9 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 RNU6-1159P-201ENST00000362933 107 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 RNU6-621P-201ENST00000364752 109 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 RNA5SP479-201ENST00000364858 117 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 Z98749.2-208ENST00000381646 500 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 Y_RNA.472-201ENST00000384322 102 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 RNU6-997P-201ENST00000384725 107 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 SNORA11.4-201ENST00000408823 129 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 TRBV24OR9-2-201ENST00000416632 435 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 AL160275.3-201ENST00000423876 471 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 AC027124.2-201ENST00000428249 105 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 MTCO1P27-201ENST00000448269 226 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 PAXBP1P1-201ENST00000449315 447 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 RPL23AP3-201ENST00000453844 468 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 BX510359.1-201ENST00000456973 237 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 MTCO1P42-201ENST00000457379 726 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 MTND1P16-201ENST00000465177 898 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 AC140059.1-201ENST00000489238 361 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 AC021146.8-201ENST00000507455 733 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 SNORA4.4-201ENST00000515921 135 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 SNORA31.3-201ENST00000516029 96 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 RPL7P20-201ENST00000520308 745 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 UTP23-205ENST00000520733 369 ntTSL 3 BASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 AC007038.2-201ENST00000608095 740 ntBASIC1.79□□□□□ -2.12
VCX3AQ9NNX9 AC004908.2-201ENST00000609090 574 ntBASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms