Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 RPS15AP36-201ENST00000492022 382 ntBASIC3.55□□□□□ -1.84
EBF3Q9H4W6 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.55□□□□□ -1.84
EBF3Q9H4W6 RNU6-27P-201ENST00000516146 107 ntBASIC3.55□□□□□ -1.84
EBF3Q9H4W6 RNU6-1046P-201ENST00000516538 107 ntBASIC3.55□□□□□ -1.84
EBF3Q9H4W6 AP000889.1-201ENST00000530968 660 ntBASIC3.55□□□□□ -1.84
EBF3Q9H4W6 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC3.55□□□□□ -1.84
EBF3Q9H4W6 OR4T1P-201ENST00000554933 911 ntBASIC3.55□□□□□ -1.84
EBF3Q9H4W6 AC106782.4-201ENST00000568264 210 ntBASIC3.55□□□□□ -1.84
EBF3Q9H4W6 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.55□□□□□ -1.84
EBF3Q9H4W6 AC098848.2-201ENST00000588023 330 ntBASIC3.55□□□□□ -1.84
EBF3Q9H4W6 AP001029.3-201ENST00000588063 596 ntBASIC3.55□□□□□ -1.84
EBF3Q9H4W6 AC106900.2-201ENST00000604994 317 ntBASIC3.55□□□□□ -1.84
EBF3Q9H4W6 AL133215.3-201ENST00000609801 448 ntBASIC3.55□□□□□ -1.84
EBF3Q9H4W6 AC090971.5-201ENST00000621102 293 ntBASIC3.55□□□□□ -1.84
EBF3Q9H4W6 AC040168.1-201ENST00000623594 991 ntBASIC3.55□□□□□ -1.84
EBF3Q9H4W6 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.55□□□□□ -1.84
EBF3Q9H4W6 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
EBF3Q9H4W6 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.55□□□□□ -1.84
EBF3Q9H4W6 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
EBF3Q9H4W6 AC058791.1-201ENST00000608412 3198 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
EBF3Q9H4W6 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.54□□□□□ -1.84
EBF3Q9H4W6 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.54□□□□□ -1.84
EBF3Q9H4W6 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.54□□□□□ -1.84
EBF3Q9H4W6 Y_RNA.128-201ENST00000363391 112 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 Y_RNA.144-201ENST00000363521 113 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 SNORA4.3-201ENST00000365564 137 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 Y_RNA.387-201ENST00000383918 102 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
EBF3Q9H4W6 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 MIR1250-201ENST00000408098 113 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 RNU4-14P-201ENST00000410858 122 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 AC096664.2-201ENST00000411843 406 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.54□□□□□ -1.84
EBF3Q9H4W6 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.54□□□□□ -1.84
EBF3Q9H4W6 Z82205.1-201ENST00000428456 297 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 PSMA2P3-201ENST00000429685 675 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 MRPS18BP2-201ENST00000434310 759 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
EBF3Q9H4W6 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.54□□□□□ -1.84
EBF3Q9H4W6 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.54□□□□□ -1.84
EBF3Q9H4W6 MTND3P16-201ENST00000452205 344 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 AL356010.1-201ENST00000456364 102 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.54□□□□□ -1.84
EBF3Q9H4W6 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.54□□□□□ -1.84
EBF3Q9H4W6 RN7SL330P-201ENST00000469709 307 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 RN7SL594P-201ENST00000470590 287 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.54□□□□□ -1.84
EBF3Q9H4W6 FCF1P8-201ENST00000510322 597 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 AC005741.1-201ENST00000511094 432 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 Y_RNA.711-201ENST00000516993 102 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 OR4R1P-201ENST00000529879 463 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.54□□□□□ -1.84
EBF3Q9H4W6 SETP7-201ENST00000552169 453 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.54□□□□□ -1.84
EBF3Q9H4W6 DNAJC8P1-201ENST00000554535 372 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 FRG2DP-202ENST00000566967 323 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC3.54□□□□□ -1.84
EBF3Q9H4W6 AC005668.1-201ENST00000571142 476 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 MIR4276-201ENST00000584832 70 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 POLR3GP2-201ENST00000588366 668 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 RNU6-89P-201ENST00000606519 100 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 AL627309.6-201ENST00000606857 840 ntBASIC3.54□□□□□ -1.84
EBF3Q9H4W6 TTK-211ENST00000627129 240 ntTSL 5 BASIC3.54□□□□□ -1.84
EBF3Q9H4W6 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
EBF3Q9H4W6 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
EBF3Q9H4W6 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
EBF3Q9H4W6 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.53□□□□□ -1.84
EBF3Q9H4W6 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
EBF3Q9H4W6 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
EBF3Q9H4W6 ZNF826P-207ENST00000622273 1910 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 RNA5SP42-201ENST00000364278 115 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 Y_RNA.231-201ENST00000364358 102 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 Y_RNA.315-201ENST00000365117 102 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 RNU6-996P-201ENST00000365438 107 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 Y_RNA.384-201ENST00000383909 102 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 RNU6-39P-201ENST00000384344 107 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 MIR514A2-201ENST00000385131 88 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 MIR514A3-201ENST00000385132 88 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 MT-TC-201ENST00000387405 66 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
EBF3Q9H4W6 RPL5P18-201ENST00000406671 891 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 AC245054.2-201ENST00000415639 319 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.53□□□□□ -1.84
EBF3Q9H4W6 AC236972.2-201ENST00000434979 310 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 RPS3AP52-201ENST00000435639 297 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.53□□□□□ -1.84
EBF3Q9H4W6 GTF2IP13-201ENST00000438487 386 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC3.53□□□□□ -1.84
EBF3Q9H4W6 RPS4XP2-201ENST00000458402 793 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 AC006512.1-201ENST00000468816 291 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 AC084357.1-201ENST00000473404 255 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 RN7SL504P-201ENST00000494496 287 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.53□□□□□ -1.84
EBF3Q9H4W6 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.53□□□□□ -1.84
EBF3Q9H4W6 AC004062.1-201ENST00000509926 645 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 TMEM248P1-201ENST00000510579 951 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 AC114797.1-201ENST00000514003 728 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 Y_RNA.665-201ENST00000516177 98 ntBASIC3.53□□□□□ -1.84
EBF3Q9H4W6 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 116.1 ms