Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC137800.2-201ENST00000574375 120 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 MTCYBP33-201ENST00000575007 1130 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 MIR3609-201ENST00000582661 80 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 AC087683.1-201ENST00000591187 441 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 AL161729.4-201ENST00000604650 476 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 AC007363.1-201ENST00000604736 620 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.6□□□□□ -1.99
LIME1Q9H400 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.6□□□□□ -1.99
LIME1Q9H400 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
LIME1Q9H400 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.6□□□□□ -1.99
LIME1Q9H400 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
LIME1Q9H400 AL035425.3-201ENST00000564206 4996 ntBASIC2.6□□□□□ -1.99
LIME1Q9H400 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.59□□□□□ -1.99
LIME1Q9H400 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.59□□□□□ -1.99
LIME1Q9H400 RNU6-701P-201ENST00000384059 107 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 RNU6-1035P-201ENST00000384477 107 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 MIR325-201ENST00000385260 98 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 RPS4XP8-201ENST00000402039 771 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
LIME1Q9H400 AL663109.1-201ENST00000411498 844 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 AL592148.1-201ENST00000413568 445 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 NDUFB4P5-201ENST00000415445 361 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC2.59□□□□□ -1.99
LIME1Q9H400 AL139281.1-201ENST00000422120 335 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC2.59□□□□□ -1.99
LIME1Q9H400 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC2.59□□□□□ -1.99
LIME1Q9H400 ISCA1P1-201ENST00000426679 387 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 ISCA1P6-201ENST00000427740 390 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 RPS24P13-201ENST00000442520 397 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.59□□□□□ -1.99
LIME1Q9H400 MTCYBP1-201ENST00000454315 1119 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC2.59□□□□□ -1.99
LIME1Q9H400 RPL21P41-201ENST00000459863 264 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC2.59□□□□□ -1.99
LIME1Q9H400 RN7SL20P-201ENST00000488827 297 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 AC007182.2-201ENST00000489251 402 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.59□□□□□ -1.99
LIME1Q9H400 AC091133.4-201ENST00000511142 308 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 MTND3P5-201ENST00000512798 333 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.59□□□□□ -1.99
LIME1Q9H400 SCARNA24.1-201ENST00000516465 137 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 RNA5SP291-201ENST00000517222 105 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.59□□□□□ -1.99
LIME1Q9H400 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC2.59□□□□□ -1.99
LIME1Q9H400 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
LIME1Q9H400 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
LIME1Q9H400 AC135279.1-201ENST00000543493 504 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2.59□□□□□ -1.99
LIME1Q9H400 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.59□□□□□ -1.99
LIME1Q9H400 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.59□□□□□ -1.99
LIME1Q9H400 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.59□□□□□ -1.99
LIME1Q9H400 AC091544.4-201ENST00000555268 342 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC2.59□□□□□ -1.99
LIME1Q9H400 MIR4435-1-201ENST00000582552 80 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 AL133393.1-201ENST00000603277 287 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 AL161798.1-201ENST00000604630 131 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 AC098614.4-201ENST00000607601 462 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 AL365204.3-201ENST00000612448 685 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 AC011939.3-201ENST00000613686 466 ntBASIC2.59□□□□□ -1.99
LIME1Q9H400 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
LIME1Q9H400 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
LIME1Q9H400 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC2.58□□□□□ -2
LIME1Q9H400 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.58□□□□□ -2
LIME1Q9H400 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.58□□□□□ -2
LIME1Q9H400 RNU6-1167P-201ENST00000363227 94 ntBASIC2.58□□□□□ -2
LIME1Q9H400 Y_RNA.318-201ENST00000365131 97 ntBASIC2.58□□□□□ -2
LIME1Q9H400 RNU6-108P-201ENST00000365558 107 ntBASIC2.58□□□□□ -2
LIME1Q9H400 RNU2-52P-201ENST00000410680 190 ntBASIC2.58□□□□□ -2
LIME1Q9H400 RNU2-16P-201ENST00000410712 136 ntBASIC2.58□□□□□ -2
LIME1Q9H400 AC127391.1-201ENST00000411737 98 ntBASIC2.58□□□□□ -2
LIME1Q9H400 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC2.58□□□□□ -2
LIME1Q9H400 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.58□□□□□ -2
LIME1Q9H400 SDCBPP3-201ENST00000419629 891 ntBASIC2.58□□□□□ -2
LIME1Q9H400 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.58□□□□□ -2
LIME1Q9H400 PIGFP2-201ENST00000421400 651 ntBASIC2.58□□□□□ -2
LIME1Q9H400 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.58□□□□□ -2
LIME1Q9H400 AC133104.1-201ENST00000429100 218 ntBASIC2.58□□□□□ -2
LIME1Q9H400 AC244505.4-201ENST00000434905 287 ntBASIC2.58□□□□□ -2
LIME1Q9H400 ARPC3P1-201ENST00000437218 533 ntBASIC2.58□□□□□ -2
LIME1Q9H400 SSXP5-201ENST00000443473 287 ntBASIC2.58□□□□□ -2
LIME1Q9H400 MTCO2P7-201ENST00000446518 666 ntBASIC2.58□□□□□ -2
LIME1Q9H400 RPL37P4-201ENST00000448908 268 ntBASIC2.58□□□□□ -2
LIME1Q9H400 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.58□□□□□ -2
LIME1Q9H400 FABP5P15-201ENST00000453566 214 ntBASIC2.58□□□□□ -2
LIME1Q9H400 RPL7P5-201ENST00000471472 736 ntBASIC2.58□□□□□ -2
LIME1Q9H400 HMGN2P13-201ENST00000476476 274 ntBASIC2.58□□□□□ -2
LIME1Q9H400 AL160314.1-201ENST00000490836 438 ntBASIC2.58□□□□□ -2
LIME1Q9H400 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.58□□□□□ -2
LIME1Q9H400 MTND2P33-201ENST00000506452 1031 ntBASIC2.58□□□□□ -2
LIME1Q9H400 AC114781.4-201ENST00000513707 639 ntBASIC2.58□□□□□ -2
LIME1Q9H400 RNU6-405P-201ENST00000516637 110 ntBASIC2.58□□□□□ -2
LIME1Q9H400 RNA5SP471-201ENST00000516971 106 ntBASIC2.58□□□□□ -2
LIME1Q9H400 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC2.58□□□□□ -2
LIME1Q9H400 AC087883.1-201ENST00000551882 391 ntBASIC2.58□□□□□ -2
LIME1Q9H400 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC2.58□□□□□ -2
LIME1Q9H400 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.58□□□□□ -2
LIME1Q9H400 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.58□□□□□ -2
LIME1Q9H400 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.58□□□□□ -2
LIME1Q9H400 AC138761.3-201ENST00000579993 334 ntBASIC2.58□□□□□ -2
LIME1Q9H400 AC068790.2-201ENST00000602601 557 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms