Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AP006587.4-201ENST00000526053 529 ntBASIC2.5□□□□□ -2.01
VPS35Q96QK1 ELOCP32-201ENST00000548625 324 ntBASIC2.5□□□□□ -2.01
VPS35Q96QK1 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC2.5□□□□□ -2.01
VPS35Q96QK1 MIR3146-201ENST00000580367 79 ntBASIC2.5□□□□□ -2.01
VPS35Q96QK1 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC2.5□□□□□ -2.01
VPS35Q96QK1 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC2.5□□□□□ -2.01
VPS35Q96QK1 DUSP12P1-201ENST00000612874 516 ntBASIC2.5□□□□□ -2.01
VPS35Q96QK1 ELF2P3-201ENST00000445099 1506 ntBASIC2.5□□□□□ -2.01
VPS35Q96QK1 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.5□□□□□ -2.01
VPS35Q96QK1 AL136360.1-201ENST00000503377 1900 ntBASIC2.5□□□□□ -2.01
VPS35Q96QK1 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC2.49□□□□□ -2.01
VPS35Q96QK1 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.49□□□□□ -2.01
VPS35Q96QK1 MIR6073-201ENST00000352083 89 ntBASIC2.49□□□□□ -2.01
VPS35Q96QK1 RNU6-701P-201ENST00000384059 107 ntBASIC2.49□□□□□ -2.01
VPS35Q96QK1 RNU6-809P-201ENST00000384461 107 ntBASIC2.49□□□□□ -2.01
VPS35Q96QK1 AC096649.2-201ENST00000416186 393 ntBASIC2.49□□□□□ -2.01
VPS35Q96QK1 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC2.49□□□□□ -2.01
VPS35Q96QK1 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.49□□□□□ -2.01
VPS35Q96QK1 RNA5SP148-201ENST00000516527 94 ntBASIC2.49□□□□□ -2.01
VPS35Q96QK1 RNU6-678P-201ENST00000516832 109 ntBASIC2.49□□□□□ -2.01
VPS35Q96QK1 RNU1-104P-201ENST00000517280 175 ntBASIC2.49□□□□□ -2.01
VPS35Q96QK1 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
VPS35Q96QK1 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.49□□□□□ -2.01
VPS35Q96QK1 AC123904.2-201ENST00000548059 300 ntBASIC2.49□□□□□ -2.01
VPS35Q96QK1 AC002400.1-201ENST00000569310 726 ntBASIC2.49□□□□□ -2.01
VPS35Q96QK1 MYL12BP1-201ENST00000569826 507 ntBASIC2.49□□□□□ -2.01
VPS35Q96QK1 AP000403.1-201ENST00000603349 851 ntBASIC2.49□□□□□ -2.01
VPS35Q96QK1 AC025594.3-201ENST00000613068 790 ntBASIC2.49□□□□□ -2.01
VPS35Q96QK1 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.49□□□□□ -2.01
VPS35Q96QK1 AC009159.1-201ENST00000618386 642 ntBASIC2.49□□□□□ -2.01
VPS35Q96QK1 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
VPS35Q96QK1 AC079416.3-201ENST00000624479 549 ntBASIC2.49□□□□□ -2.01
VPS35Q96QK1 AC007671.2-201ENST00000637344 619 ntBASIC2.49□□□□□ -2.01
VPS35Q96QK1 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
VPS35Q96QK1 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.49□□□□□ -2.01
VPS35Q96QK1 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.49□□□□□ -2.01
VPS35Q96QK1 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
VPS35Q96QK1 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
VPS35Q96QK1 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
VPS35Q96QK1 U3.12-201ENST00000364498 214 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 SNORA67.1-201ENST00000364749 141 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 RNY3P13-201ENST00000365542 102 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
VPS35Q96QK1 MIR518C-201ENST00000384822 101 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 MIR144-201ENST00000384886 86 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 HIGD1AP15-201ENST00000416198 280 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC2.48□□□□□ -2.01
VPS35Q96QK1 AL353777.1-201ENST00000425552 326 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 RPL37P21-201ENST00000435890 276 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC2.48□□□□□ -2.01
VPS35Q96QK1 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC2.48□□□□□ -2.01
VPS35Q96QK1 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.48□□□□□ -2.01
VPS35Q96QK1 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.48□□□□□ -2.01
VPS35Q96QK1 RBM43P1-201ENST00000476891 1081 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 EIF4EP3-201ENST00000498782 656 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC2.48□□□□□ -2.01
VPS35Q96QK1 RNU5F-8P-201ENST00000515941 111 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 SCARNA11.3-201ENST00000517276 130 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 OR4R1P-201ENST00000529879 463 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 MRPS36P5-201ENST00000551909 298 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 NACAP3-201ENST00000552100 481 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.48□□□□□ -2.01
VPS35Q96QK1 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.48□□□□□ -2.01
VPS35Q96QK1 AC234778.2-201ENST00000566241 354 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.48□□□□□ -2.01
VPS35Q96QK1 AC024619.4-201ENST00000580924 316 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 MIR3117-201ENST00000584034 78 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.48□□□□□ -2.01
VPS35Q96QK1 AL355598.1-201ENST00000604169 202 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 uc_338.12-201ENST00000616344 181 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 MIR6852-201ENST00000621699 66 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 AC010889.1-201ENST00000566193 2666 ntBASIC2.48□□□□□ -2.01
VPS35Q96QK1 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.48□□□□□ -2.01
VPS35Q96QK1 Z82209.1-201ENST00000422141 2135 ntBASIC2.47□□□□□ -2.01
VPS35Q96QK1 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
VPS35Q96QK1 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS35Q96QK1 UBE2V1P2-201ENST00000397758 440 ntBASIC2.47□□□□□ -2.01
VPS35Q96QK1 RPS4XP7-201ENST00000406274 780 ntBASIC2.47□□□□□ -2.01
VPS35Q96QK1 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS35Q96QK1 AL353729.1-201ENST00000425044 720 ntBASIC2.47□□□□□ -2.01
VPS35Q96QK1 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS35Q96QK1 AL445687.1-201ENST00000439946 251 ntBASIC2.47□□□□□ -2.01
VPS35Q96QK1 NEFMP1-201ENST00000443423 1006 ntBASIC2.47□□□□□ -2.01
VPS35Q96QK1 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS35Q96QK1 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS35Q96QK1 AC126389.1-201ENST00000477436 290 ntBASIC2.47□□□□□ -2.01
VPS35Q96QK1 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.47□□□□□ -2.01
VPS35Q96QK1 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC2.47□□□□□ -2.01
VPS35Q96QK1 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS35Q96QK1 RNU6-201P-201ENST00000517100 61 ntBASIC2.47□□□□□ -2.01
VPS35Q96QK1 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS35Q96QK1 RPS3AP4-201ENST00000555161 764 ntBASIC2.47□□□□□ -2.01
VPS35Q96QK1 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS35Q96QK1 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.47□□□□□ -2.01
VPS35Q96QK1 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.47□□□□□ -2.01
VPS35Q96QK1 AC060766.3-201ENST00000591442 263 ntBASIC2.47□□□□□ -2.01
VPS35Q96QK1 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.47□□□□□ -2.01
VPS35Q96QK1 AC022022.2-201ENST00000602989 360 ntBASIC2.47□□□□□ -2.01
VPS35Q96QK1 AC135507.1-201ENST00000607214 561 ntBASIC2.47□□□□□ -2.01
VPS35Q96QK1 AL589743.7-201ENST00000612637 233 ntBASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms